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NM_000090.3(COL3A1):c.2022+2T>C (p.Gly660_Lys674del) AND Ehlers-Danlos syndrome, type 4

Germline classification:
Pathogenic (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000087352.1

Allele description

NM_000090.3(COL3A1):c.2022+2T>C (p.Gly660_Lys674del)

Gene:
COL3A1:collagen type III alpha 1 chain [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q32.2
Genomic location:
Preferred name:
NM_000090.3(COL3A1):c.2022+2T>C (p.Gly660_Lys674del)
HGVS:
  • NC_000002.12:g.188998720T>C
  • NG_007404.1:g.29348T>C
  • NM_000090.3:c.2022+2T>C
  • NP_000081.1:p.Gly660_Lys674del
  • LRG_3t1:c.2022+2T>C
  • LRG_3:g.29348T>C
  • LRG_3p1:p.Gly660_Lys674del
  • NC_000002.11:g.189863446T>C
Links:
dbSNP: rs587779429
NCBI 1000 Genomes Browser:
rs587779429
Molecular consequence:
  • NM_000090.3:c.2022+2T>C - splice donor variant - [Sequence Ontology: SO:0001575]
Observations:
2

Condition(s)

Name:
Ehlers-Danlos syndrome, type 4 (EDS4)
Synonyms:
Ehlers-Danlos Syndrome Type IV
Identifiers:
MedGen: C0268338; Orphanet: 286; OMIM: 130050

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000120234Collagen Diagnostic Laboratory
no assertion criteria provided
Pathogenicgermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes2not providednot providednot providednot providedclinical testing

Details of each submission

From Collagen Diagnostic Laboratory, SCV000120234.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 1, 2017