NM_001034853.2(RPGR):c.1164G>A (p.Ala388=) AND not provided

Germline classification:: Benign (2 submissions)
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000085044.4

Allele description [Variation Report for NM_001034853.2(RPGR):c.1164G>A (p.Ala388=)]

NM_001034853.2(RPGR):c.1164G>A (p.Ala388=)

Gene:

RPGR:retinitis pigmentosa GTPase regulator [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

Xp11.4

Genomic location:

Preferred name:

NM_001034853.2(RPGR):c.1164G>A (p.Ala388=)

HGVS:

NC_000023.11:g.38299037C>T
NG_009553.1:g.33499G>A
NM_000328.3:c.1164G>A
NM_001034853.2:c.1164G>AMANE SELECT
NM_001367245.1:c.1161G>A
NM_001367246.1:c.1060-1585G>A
NM_001367247.1:c.1164G>A
NM_001367248.1:c.1194G>A
NM_001367249.1:c.1161G>A
NM_001367250.1:c.1161G>A
NM_001367251.1:c.1060-1585G>A
NP_000319.1:p.Ala388=
NP_001030025.1:p.Ala388=
NP_001354174.1:p.Ala387=
NP_001354176.1:p.Ala388=
NP_001354177.1:p.Ala398=
NP_001354178.1:p.Ala387=
NP_001354179.1:p.Ala387=
NC_000023.10:g.38158290C>T
NM_000328.2:c.1164G>A
NM_001034853.1:c.1164G>A
NP_000319.1:p.(=)
NR_159803.1:n.1366G>A
NR_159804.1:n.1215G>A
NR_159805.1:n.1306G>A
NR_159806.1:n.1306G>A
NR_159807.1:n.1306G>A
NR_159808.1:n.1418G>A
p.Ala388Ala

Links:

dbSNP: rs1801686

NCBI 1000 Genomes Browser:

rs1801686

Molecular consequence:

NM_001367246.1:c.1060-1585G>A - intron variant - [Sequence Ontology: SO:0001627]
NM_001367251.1:c.1060-1585G>A - intron variant - [Sequence Ontology: SO:0001627]
NR_159803.1:n.1366G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_159804.1:n.1215G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_159805.1:n.1306G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_159806.1:n.1306G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_159807.1:n.1306G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_159808.1:n.1418G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NM_000328.3:c.1164G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001034853.2:c.1164G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001367245.1:c.1161G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001367247.1:c.1164G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001367248.1:c.1194G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001367249.1:c.1161G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001367250.1:c.1161G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:: none provided; RECLASSIFIED - ADRA2C POLYMORPHISM; RECLASSIFIED - ADRB1 POLYMORPHISM
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000117180	Retina International	no classification provided	not provided	unknown	not provided
SCV005276103	Breakthrough Genomics, Breakthrough Genomics	criteria provided, single submitter (ACMG Guidelines, 2015)	Benign	germline	not provided	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000117180

Retina International

no classification provided

not provided

unknown

not provided

SCV005276103

Breakthrough Genomics, Breakthrough Genomics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Benign

germline

not provided

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	not provided
not provided	not provided	not provided	not provided	not provided	not provided	1	not provided	literature only

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Retina International, SCV000117180.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	not provided	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	not provided	1	not provided	not provided		not provided	not provided	not provided	not provided

From Breakthrough Genomics, Breakthrough Genomics, SCV005276103.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	not provided	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Apr 13, 2025

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