NM_007294.4(BRCA1):c.4765C>T (p.Arg1589Cys) AND Breast-ovarian cancer, familial 1

Clinical significance:Conflicting interpretations of pathogenicity, Benign(1);Uncertain significance(1) (Last evaluated: Aug 10, 2012)

Review status:(0/4) 0 stars out of maximum of 4 stars

no assertion criteria provided

Based on:
2 submissions [Details]
Record status:
current
Accession:
RCV000083212.4

Allele description [Variation Report for NM_007294.4(BRCA1):c.4765C>T (p.Arg1589Cys)]

NM_007294.4(BRCA1):c.4765C>T (p.Arg1589Cys)

Gene:
BRCA1:BRCA1 DNA repair associated [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17q21.31
Genomic location:
Preferred name:
NM_007294.4(BRCA1):c.4765C>T (p.Arg1589Cys)
HGVS:
  • NC_000017.11:g.43071149G>A
  • NG_005905.2:g.146835C>T
  • NM_007294.3:c.4765C>T
  • NM_007294.4:c.4765C>TMANE SELECT
  • NM_007297.4:c.4624C>T
  • NM_007298.3:c.1453C>T
  • NM_007299.4:c.1453C>T
  • NM_007300.4:c.4828C>T
  • NP_009225.1:p.Arg1589Cys
  • NP_009225.1:p.Arg1589Cys
  • NP_009228.2:p.Arg1542Cys
  • NP_009229.2:p.Arg485Cys
  • NP_009230.2:p.Arg485Cys
  • NP_009231.2:p.Arg1610Cys
  • LRG_292t1:c.4765C>T
  • LRG_292:g.146835C>T
  • LRG_292p1:p.Arg1589Cys
  • NC_000017.10:g.41223166G>A
  • NM_007294.4:c.4765C>T
  • NM_007300.3:c.4828C>T
  • NR_027676.2:n.4942C>T
  • U14680.1:n.4884C>T
  • p.R1589C
Nucleotide change:
4884C>T
Protein change:
R1542C
Links:
dbSNP: rs80357002
NCBI 1000 Genomes Browser:
rs80357002
Molecular consequence:
  • NM_007294.3:c.4765C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_007294.4:c.4765C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_007297.4:c.4624C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_007298.3:c.1453C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_007299.4:c.1453C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_007300.4:c.4828C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_027676.2:n.4942C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Observations:
4

Condition(s)

Name:
Breast-ovarian cancer, familial 1 (BROVCA1)
Synonyms:
BREAST-OVARIAN CANCER, FAMILIAL, SUSCEPTIBILITY TO, 1; OVARIAN CANCER, SUSCEPTIBILITY TO; BREAST CANCER, FAMILIAL, SUSCEPTIBILITY TO, 1; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0011450; MedGen: C2676676; Orphanet: 145; OMIM: 604370

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000115286Sharing Clinical Reports Project (SCRP)no assertion criteria providedBenign
(Aug 10, 2012)

History

germlineclinical testing

SCV000145176Breast Cancer Information Core (BIC) (BRCA1)no assertion criteria providedUncertain significance
(Feb 20, 2004)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided2not providednot provided2not providedclinical testing
Latin American, Caribbean, Puerto Ricangermlineyes1not providednot providednot providednot providedclinical testing
Western Europeangermlineyes1not providednot providednot providednot providedclinical testing

Details of each submission

From Sharing Clinical Reports Project (SCRP), SCV000115286.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot provided2not providednot providednot providednot providednot provided See 1

Co-occurrences

#ZygosityAllelesNumber of Observations
1SingleHeterozygoteBRCA2:7787G>A (R2520Q)1

From Breast Cancer Information Core (BIC) (BRCA1), SCV000145176.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Latin American, Caribbean, Puerto Rican1not providednot providedclinical testingnot provided
2Western European1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided
2germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Sep 18, 2021

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