NM_000251.2(MSH2):c.82delG (p.Glu28Argfs) AND Lynch syndrome

Clinical significance:Pathogenic (Last evaluated: Sep 5, 2013)

Review status:3 stars out of maximum of 4 stars

reviewed by expert panel

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000076731.2

Allele description

NM_000251.2(MSH2):c.82delG (p.Glu28Argfs)

Gene:
MSH2:mutS homolog 2 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
2p21
Genomic location:
Preferred name:
NM_000251.2(MSH2):c.82delG (p.Glu28Argfs)
HGVS:
  • NC_000002.12:g.47403273delG
  • NG_007110.2:g.5150delG
  • NM_000251.2:c.82delG
  • NM_001258281.1:c.-30-87delG
  • NP_000242.1:p.Glu28Argfs
  • LRG_218t1:c.82delG
  • LRG_218:g.5150delG
  • LRG_218p1:p.Glu28Argfs
  • NC_000002.11:g.47630412delG
  • NM_000251.1:c.82del
Links:
dbSNP: rs587779188
NCBI 1000 Genomes Browser:
rs587779188
Molecular consequence:
  • NM_000251.2:c.82delG - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001258281.1:c.-30-87delG - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Lynch syndrome (HNPCC)
Synonyms:
Hereditary nonpolyposis colon cancer
Identifiers:
MedGen: C1333990; OMIM: PS120435

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000107767InSiGHTreviewed by expert panel
Pathogenic
(Sep 5, 2013)
germlineresearch

Citation Link

Description

SCV000107767

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedresearch

Details of each submission

From InSiGHT, SCV000107767.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearchnot provided

Description

Coding sequence variation resulting in a stop codon

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 13, 2017