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NM_000179.3(MSH6):c.260+22C>G AND Lynch syndrome

Germline classification:
Benign (1 submission)
Last evaluated:
Sep 5, 2013
Review status:
3 stars out of maximum of 4 stars
reviewed by expert panel
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000074760.3

Allele description [Variation Report for NM_000179.3(MSH6):c.260+22C>G]

NM_000179.3(MSH6):c.260+22C>G

Genes:
LOC129933707:ATAC-STARR-seq lymphoblastoid silent region 11468 [Gene]
MSH6:mutS homolog 6 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p16.3
Genomic location:
Preferred name:
NM_000179.3(MSH6):c.260+22C>G
HGVS:
  • NC_000002.12:g.47783515C>G
  • NG_007111.1:g.5369C>G
  • NM_000179.3:c.260+22C>GMANE SELECT
  • NM_001281492.2:c.237+45C>G
  • NM_001281493.2:c.-477+22C>G
  • LRG_219t1:c.260+22C>G
  • LRG_219:g.5369C>G
  • NC_000002.11:g.48010654C>G
  • NM_000179.2:c.260+22C>G
Links:
dbSNP: rs55927047
NCBI 1000 Genomes Browser:
rs55927047
Molecular consequence:
  • NM_000179.3:c.260+22C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001281492.2:c.237+45C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001281493.2:c.-477+22C>G - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Lynch syndrome
Identifiers:
MONDO: MONDO:0005835; MedGen: C4552100

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000107970International Society for Gastrointestinal Hereditary Tumours (InSiGHT)
reviewed by expert panel

(Guidelines v1.9)
no known pathogenicity
(Sep 5, 2013)
germlineresearch

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedresearch

Details of each submission

From International Society for Gastrointestinal Hereditary Tumours (InSiGHT), SCV000107970.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearchnot provided

Description

MAF >1%

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 14, 2024