NM_000376.3(VDR):c.238C>A (p.Arg80=) AND not provided

Germline classification:
Likely benign (2 submissions)
Last evaluated:
Dec 30, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000054611.3

Allele description [Variation Report for NM_000376.3(VDR):c.238C>A (p.Arg80=)]

NM_000376.3(VDR):c.238C>A (p.Arg80=)

Gene:
VDR:vitamin D receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q13.11
Genomic location:
Preferred name:
NM_000376.3(VDR):c.238C>A (p.Arg80=)
HGVS:
  • NC_000012.12:g.47865086G>T
  • NG_008731.1:g.44946C>A
  • NM_000376.3:c.238C>AMANE SELECT
  • NM_001017535.2:c.238C>A
  • NM_001017536.2:c.388C>A
  • NM_001364085.2:c.238C>A
  • NM_001374661.1:c.238C>A
  • NM_001374662.1:c.238C>A
  • NP_000367.1:p.Arg80=
  • NP_001017535.1:p.Arg80=
  • NP_001017536.1:p.Arg130=
  • NP_001351014.1:p.Arg80=
  • NP_001361590.1:p.Arg80=
  • NP_001361591.1:p.Arg80=
  • NC_000012.11:g.48258869G>T
  • NM_000376.2:c.238C>A
Links:
dbSNP: rs387907554
NCBI 1000 Genomes Browser:
rs387907554
Molecular consequence:
  • NM_000376.3:c.238C>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001017535.2:c.238C>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001017536.2:c.388C>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001364085.2:c.238C>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001374661.1:c.238C>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001374662.1:c.238C>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000077301Martin Pollak Laboratory, Beth Israel Deaconess Medical Center
no assertion criteria provided
unknownnot providednot provided

SCV003025039Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Likely benign
(Dec 30, 2023)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Description

Higher UCa2+ group

SCV000077301

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providednot providednot providednot providednot providednot provided1not providedliterature only

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240-242.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Martin Pollak Laboratory, Beth Israel Deaconess Medical Center, SCV000077301.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot providednot provided

Description

Converted during submission to Uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1not providednot provided1not providednot providednot providednot providednot providednot provided

From Invitae, SCV003025039.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 5, 2024