GRCh38/hg38 16q24.2-24.3(chr16:88159660-89506042)x1 AND See cases

Clinical significance:Pathogenic (Last evaluated: Aug 12, 2011)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:

Allele description [Variation Report for GRCh38/hg38 16q24.2-24.3(chr16:88159660-89506042)x1]

GRCh38/hg38 16q24.2-24.3(chr16:88159660-89506042)x1

  • CBFA2T3:CBFA2/RUNX1 translocation partner 3 [Gene - OMIM - HGNC]
  • SNAI3-AS1:SNAI3 antisense RNA 1 [Gene - HGNC]
  • ZC3H18-AS1:ZC3H18 antisense RNA 1 (head to head) [Gene - HGNC]
  • ACSF3:acyl-CoA synthetase family member 3 [Gene - OMIM - HGNC]
  • APRT:adenine phosphoribosyltransferase [Gene - OMIM - HGNC]
  • ANKRD11:ankyrin repeat domain 11 [Gene - OMIM - HGNC]
  • CDH15:cadherin 15 [Gene - OMIM - HGNC]
  • CDT1:chromatin licensing and DNA replication factor 1 [Gene - OMIM - HGNC]
  • CYBA:cytochrome b-245 alpha chain [Gene - OMIM - HGNC]
  • CTU2:cytosolic thiouridylase subunit 2 [Gene - HGNC]
  • GALNS:galactosamine (N-acetyl)-6-sulfatase [Gene - OMIM - HGNC]
  • IL17C:interleukin 17C [Gene - OMIM - HGNC]
  • LINC00304:long intergenic non-protein coding RNA 304 [Gene - HGNC]
  • MVD:mevalonate diphosphate decarboxylase [Gene - OMIM - HGNC]
  • MIR4722:microRNA 4722 [Gene - HGNC]
  • MIR5189:microRNA 5189 [Gene - HGNC]
  • PIEZO1:piezo type mechanosensitive ion channel component 1 [Gene - OMIM - HGNC]
  • PABPN1L:poly(A) binding protein nuclear 1 like (cytoplasmic) [Gene - HGNC]
  • RNF166:ring finger protein 166 [Gene - HGNC]
  • SNAI3:snail family transcriptional repressor 3 [Gene - OMIM - HGNC]
  • SLC22A31:solute carrier family 22 member 31 [Gene - HGNC]
  • TRAPPC2L:trafficking protein particle complex 2-like [Gene - OMIM - HGNC]
  • LOC100129697:uncharacterized LOC100129697 [Gene]
  • LOC100287036:uncharacterized LOC100287036 [Gene]
  • LOC100289580:uncharacterized LOC100289580 [Gene]
  • LOC101927793:uncharacterized LOC101927793 [Gene]
  • LOC101927817:uncharacterized LOC101927817 [Gene]
  • LOC101928880:uncharacterized LOC101928880 [Gene]
  • LOC105371414:uncharacterized LOC105371414 [Gene]
  • LOC339059:uncharacterized LOC339059 [Gene]
  • LOC400558:uncharacterized LOC400558 [Gene]
  • ZC3H18:zinc finger CCCH-type containing 18 [Gene - HGNC]
  • ZNF469:zinc finger protein 469 [Gene - OMIM - HGNC]
  • ZNF778:zinc finger protein 778 [Gene - HGNC]
  • ZFPM1:zinc finger protein, FOG family member 1 [Gene - OMIM - HGNC]
Variant type:
copy number loss
Cytogenetic location:
Genomic location:
Preferred name:
GRCh38/hg38 16q24.2-24.3(chr16:88159660-89506042)x1
  • NC_000016.10:g.(?_88159660)_(89506042_?)del
  • NC_000016.8:g.(?_86750767)_(88099951_?)del
  • NC_000016.9:g.(?_88193266)_(89572450_?)del
dbVar: nssv577574; dbVar: nsv532044


See cases [See the Variation display for details]

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
SCV000080721ISCA site 6

See additional submitters

criteria provided, single submitter
(Submitter's publication)
(Aug 12, 2011)
de novoclinical testing

PubMed (1)
[See all records that cite this PMID]


Copy number variation identified through the course of routine clinical cytogenomic testing in postnatal populations. Clinical assertions have been curated as described in Kaminsky et al. 2011.


Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyes1not providednot providednot providednot providedclinical testing



An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabilities.

Kaminsky EB, Kaul V, Paschall J, Church DM, Bunke B, Kunig D, Moreno-De-Luca D, Moreno-De-Luca A, Mulle JG, Warren ST, Richard G, Compton JG, Fuller AE, Gliem TJ, Huang S, Collinson MN, Beal SJ, Ackley T, Pickering DL, Golden DM, Aston E, Whitby H, et al.

Genet Med. 2011 Sep;13(9):777-84. doi: 10.1097/GIM.0b013e31822c79f9.

PubMed [citation]

Details of each submission

From ISCA site 6, SCV000080721.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot providedDiscovery1not providednot providednot provided

Last Updated: Jun 7, 2016