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NM_000274.4(OAT):c.267C>A (p.Asn89Lys) AND Ornithine aminotransferase deficiency

Germline classification:
Likely pathogenic (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000049529.1

Allele description [Variation Report for NM_000274.4(OAT):c.267C>A (p.Asn89Lys)]

NM_000274.4(OAT):c.267C>A (p.Asn89Lys)

Gene:
OAT:ornithine aminotransferase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q26.13
Genomic location:
Preferred name:
NM_000274.4(OAT):c.267C>A (p.Asn89Lys)
HGVS:
  • NC_000010.11:g.124408898G>T
  • NG_008861.1:g.15053C>A
  • NM_000274.4:c.267C>AMANE SELECT
  • NM_001171814.2:c.-148C>A
  • NM_001322965.2:c.267C>A
  • NM_001322966.2:c.267C>A
  • NM_001322967.2:c.267C>A
  • NM_001322968.2:c.267C>A
  • NM_001322969.2:c.267C>A
  • NM_001322970.2:c.267C>A
  • NM_001322971.2:c.199+3075C>A
  • NM_001322974.2:c.-448C>A
  • NP_000265.1:p.Asn89Lys
  • NP_000265.1:p.Asn89Lys
  • NP_001309894.1:p.Asn89Lys
  • NP_001309895.1:p.Asn89Lys
  • NP_001309896.1:p.Asn89Lys
  • NP_001309897.1:p.Asn89Lys
  • NP_001309898.1:p.Asn89Lys
  • NP_001309899.1:p.Asn89Lys
  • LRG_685t1:c.267C>A
  • LRG_685:g.15053C>A
  • LRG_685p1:p.Asn89Lys
  • NC_000010.10:g.126097467G>T
  • NM_000274.3:c.267C>A
  • P04181:p.Asn89Lys
Protein change:
N89K
Links:
UniProtKB: P04181#VAR_000567; dbSNP: rs386833602
NCBI 1000 Genomes Browser:
rs386833602
Molecular consequence:
  • NM_001171814.2:c.-148C>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001322974.2:c.-448C>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001322971.2:c.199+3075C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000274.4:c.267C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322965.2:c.267C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322966.2:c.267C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322967.2:c.267C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322968.2:c.267C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322969.2:c.267C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322970.2:c.267C>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Ornithine aminotransferase deficiency (GACR)
Synonyms:
OAT deficiency; Ornithine ketoacid aminotransferase deficiency; Gyrate atrophy; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0009796; MedGen: C0018425; Orphanet: 414; OMIM: 258870

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000081966Juha Muilu Group; Institute for Molecular Medicine Finland (FIMM)
no assertion criteria provided
probable-pathogenicnot providednot provided

PubMed (1)
[See all records that cite this PMID]

Description

FinDis database variant: This variant was not found or characterized by our laboratory, data were collected from public sources: see reference

SCV000081966

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providednot providednot providednot providednot providednot provided1not providedliterature only

Citations

PubMed

Ornithine delta-aminotransferase mutations in gyrate atrophy. Allelic heterogeneity and functional consequences.

Brody LC, Mitchell GA, Obie C, Michaud J, Steel G, Fontaine G, Robert MF, Sipila I, Kaiser-Kupfer M, Valle D.

J Biol Chem. 1992 Feb 15;267(5):3302-7.

PubMed [citation]
PMID:
1737786

Details of each submission

From Juha Muilu Group; Institute for Molecular Medicine Finland (FIMM), SCV000081966.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot provided PubMed (1)

Description

Converted during submission to Likely pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1not providednot provided1not providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022