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NM_003867.4(FGF17):c.323T>C (p.Ile108Thr) AND Hypogonadotropic hypogonadism 20 with or without anosmia

Germline classification:
risk factor (1 submission)
Last evaluated:
May 2, 2013
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000043598.3

Allele description [Variation Report for NM_003867.4(FGF17):c.323T>C (p.Ile108Thr)]

NM_003867.4(FGF17):c.323T>C (p.Ile108Thr)

Gene:
FGF17:fibroblast growth factor 17 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8p21.3
Genomic location:
Preferred name:
NM_003867.4(FGF17):c.323T>C (p.Ile108Thr)
HGVS:
  • NC_000008.11:g.22046599T>C
  • NG_033889.1:g.8683T>C
  • NM_001304478.1:c.290T>C
  • NM_003867.4:c.323T>CMANE SELECT
  • NP_001291407.1:p.Ile97Thr
  • NP_003858.1:p.Ile108Thr
  • NC_000008.10:g.21904110T>C
  • O60258:p.Ile108Thr
Protein change:
I108T; ILE108THR
Links:
UniProtKB: O60258#VAR_069947; OMIM: 603725.0001; dbSNP: rs398123024
NCBI 1000 Genomes Browser:
rs398123024
Molecular consequence:
  • NM_001304478.1:c.290T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_003867.4:c.323T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hypogonadotropic hypogonadism 20 with or without anosmia (HH20)
Synonyms:
HYPOGONADOTROPIC HYPOGONADISM 20 WITH ANOSMIA, SUSCEPTIBILITY TO; HYPOGONADOTROPIC HYPOGONADISM 20 WITH ANOSMIA
Identifiers:
MONDO: MONDO:0014106; MedGen: C3808983; Orphanet: 478; OMIM: 615270

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000071616OMIM
no assertion criteria provided
risk factor
(May 2, 2013)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

The syndrome of anosmia with hypogonadotropic hypogonadism: a genetic study of 18 new families and a review.

White BJ, Rogol AD, Brown KS, Lieblich JM, Rosen SW.

Am J Med Genet. 1983 Jul;15(3):417-35.

PubMed [citation]
PMID:
6881209

Heparan sulfate 6-O-sulfotransferase 1, a gene involved in extracellular sugar modifications, is mutated in patients with idiopathic hypogonadotrophic hypogonadism.

Tornberg J, Sykiotis GP, Keefe K, Plummer L, Hoang X, Hall JE, Quinton R, Seminara SB, Hughes V, Van Vliet G, Van Uum S, Crowley WF, Habuchi H, Kimata K, Pitteloud N, Bülow HE.

Proc Natl Acad Sci U S A. 2011 Jul 12;108(28):11524-9. doi: 10.1073/pnas.1102284108. Epub 2011 Jun 23.

PubMed [citation]
PMID:
21700882
PMCID:
PMC3136273
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000071616.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

In the female proband from a large consanguineous 10-generation French Canadian family with anosmic hypogonadotropic hypogonadism (HH20; 615270) and cleft palate, previously reported by White et al. (1983) and in whom Tornberg et al. (2011) had identified missense mutations in the FGFR1 (R250Q; 136350.0025) and HS6ST1 (R296W; 604846.0002) genes, Miraoui et al. (2013) also identified heterozygosity for a c.323T-C transition in exon 4 of the FGF17 gene, resulting in an ile108-to-thr (I108T) substitution at a highly conserved residue in the FGF core domain. In addition, the proband was heterozygous and homozygous for 2 missense mutations in another FGF-network gene, FLRT3 (E97G, 604808.0001 and S144I, 604808.0002, respectively). Three other affected family members also carried mutations in the FGFR1, HS6ST1, and FLRT3 genes, and 4 unaffected family members carried 1 or 2 mutations in those genes, but none had a mutation in the FGF17 gene. The I108T mutation was not found in 155 controls or in the 1000 Genomes Project database. Analysis of physical interactions between the ligand-binding region of FGFR1 and FGF17 by surface-plasmon-resonance spectroscopy demonstrated that the I108T mutant was defective in FGFR1 activation compared to wildtype; in addition, the I108T mutant completely failed to activate the R250Q FGFR1 mutant, indicating that these 2 loss-of-function substitutions act in an additive manner.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022