NM_001267550.2(TTN):c.32197+11G>A AND not specified

Clinical significance:Benign/Likely benign (Last evaluated: Mar 18, 2015)

Review status:2 stars out of maximum of 4 stars

criteria provided, multiple submitters, no conflicts

Based on:
4 submissions [Details]
Record status:
current
Accession:
RCV000040131.7

Allele description [Variation Report for NM_001267550.2(TTN):c.32197+11G>A]

NM_001267550.2(TTN):c.32197+11G>A

Gene:
TTN:titin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q31.2
Genomic location:
Preferred name:
NM_001267550.2(TTN):c.32197+11G>A
HGVS:
  • NC_000002.12:g.178688666C>T
  • NG_011618.3:g.147137G>A
  • NM_001256850.1:c.31246+11G>A
  • NM_001256850.1:c.31246+11G>A
  • NM_001267550.2:c.32197+11G>AMANE SELECT
  • NM_003319.4:c.13283-46349G>A
  • NM_133378.4:c.28465+11G>A
  • NM_133378.4:c.28465+11G>A
  • NM_133432.3:c.13658-46349G>A
  • NM_133437.4:c.13859-46349G>A
  • LRG_391:g.147137G>A
  • NC_000002.11:g.179553393C>T
  • NC_000002.11:g.179553393C>T
  • NM_133379.3:c.*56919G>A
  • c.28465+11G>A
Links:
dbSNP: rs369265969
NCBI 1000 Genomes Browser:
rs369265969
Molecular consequence:
  • NM_001256850.1:c.31246+11G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001267550.2:c.32197+11G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_003319.4:c.13283-46349G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_133378.4:c.28465+11G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_133432.3:c.13658-46349G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_133437.4:c.13859-46349G>A - intron variant - [Sequence Ontology: SO:0001627]
Observations:
3

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000063822Laboratory for Molecular Medicine, Partners HealthCare Personalized Medicinecriteria provided, single submitter
Likely benign
(Mar 18, 2015)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV000236632GeneDxcriteria provided, single submitter
Benign
(Oct 29, 2014)
germlineclinical testing

Citation Link,

SCV001918441Clinical Genetics,Academic Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria providedBenigngermlineclinical testing

SCV001970923Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria providedBenigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided33not providednot providednot providedclinical testing
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Partners HealthCare Personalized Medicine, SCV000063822.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided3not providednot providedclinical testing PubMed (1)

Description

c.28465+11G>A in intron 123 of TTN: This variant is not expected to have clinica l significance because it is not located within the splice consensus sequence. I t has been identified in 51/66556 European chromosomes by the Exome Aggregation Consortium (ExAC, http://exac.broadinstitute.org; dbSNP rs369265969).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided3not provided3not provided

From GeneDx, SCV000236632.10

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics,Academic Medical Center - VKGL Data-share Consensus, SCV001918441.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001970923.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 20, 2021

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