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NM_001384140.1(PCDH15):c.2786G>A (p.Arg929Gln) AND not specified

Germline classification:
Benign (4 submissions)
Last evaluated:
Jun 23, 2009
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000039715.14

Allele description [Variation Report for NM_001384140.1(PCDH15):c.2786G>A (p.Arg929Gln)]

NM_001384140.1(PCDH15):c.2786G>A (p.Arg929Gln)

Gene:
PCDH15:protocadherin related 15 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q21.1
Genomic location:
Preferred name:
NM_001384140.1(PCDH15):c.2786G>A (p.Arg929Gln)
HGVS:
  • NC_000010.11:g.53995731C>T
  • NG_009191.3:g.1638452G>A
  • NM_001142763.2:c.2801G>A
  • NM_001142764.2:c.2786G>A
  • NM_001142765.2:c.2573G>A
  • NM_001142766.2:c.2786G>A
  • NM_001142767.2:c.2675G>A
  • NM_001142768.2:c.2720G>A
  • NM_001142769.3:c.2822G>A
  • NM_001142770.3:c.2786G>A
  • NM_001142771.2:c.2801G>A
  • NM_001142772.2:c.2786G>A
  • NM_001142773.2:c.2720G>A
  • NM_001354404.2:c.2720G>A
  • NM_001354411.2:c.2807G>A
  • NM_001354420.2:c.2786G>A
  • NM_001354429.2:c.2786G>A
  • NM_001354430.2:c.2786G>A
  • NM_001384140.1:c.2786G>AMANE SELECT
  • NM_033056.4:c.2786G>A
  • NP_001136235.1:p.Arg934Gln
  • NP_001136236.1:p.Arg929Gln
  • NP_001136237.1:p.Arg858Gln
  • NP_001136238.1:p.Arg929Gln
  • NP_001136239.1:p.Arg892Gln
  • NP_001136240.1:p.Arg907Gln
  • NP_001136241.1:p.Arg941Gln
  • NP_001136242.1:p.Arg929Gln
  • NP_001136243.1:p.Arg934Gln
  • NP_001136244.1:p.Arg929Gln
  • NP_001136245.1:p.Arg907Gln
  • NP_001341333.1:p.Arg907Gln
  • NP_001341340.1:p.Arg936Gln
  • NP_001341349.1:p.Arg929Gln
  • NP_001341358.1:p.Arg929Gln
  • NP_001341359.1:p.Arg929Gln
  • NP_001371069.1:p.Arg929Gln
  • NP_149045.3:p.Arg929Gln
  • NC_000010.10:g.55755491C>T
  • NM_033056.3:c.2786G>A
  • Q96QU1:p.Arg929Gln
  • c.2786G>A
Protein change:
R858Q
Links:
UniProtKB: Q96QU1#VAR_028292; dbSNP: rs2135720
NCBI 1000 Genomes Browser:
rs2135720
Molecular consequence:
  • NM_001142763.2:c.2801G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142764.2:c.2786G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142765.2:c.2573G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142766.2:c.2786G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142767.2:c.2675G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142768.2:c.2720G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142769.3:c.2822G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142770.3:c.2786G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142771.2:c.2801G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142772.2:c.2786G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142773.2:c.2720G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354404.2:c.2720G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354411.2:c.2807G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354420.2:c.2786G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354429.2:c.2786G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354430.2:c.2786G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384140.1:c.2786G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_033056.4:c.2786G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
858

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000063404Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Benign
(Jun 23, 2009)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV000315064PreventionGenetics, part of Exact Sciences
criteria provided, single submitter

(ACMG Guidelines, 2015)
Benigngermlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001740749Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus
no assertion criteria provided
Benigngermlineclinical testing

SCV001955710Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlinenot provided871858not providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000063404.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided871not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided871not provided858not provided

From PreventionGenetics, part of Exact Sciences, SCV000315064.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus, SCV001740749.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus, SCV001955710.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 10, 2024