NM_022124.6(CDH23):c.67+12C>T AND not specified

Clinical significance:Benign (Last evaluated: Apr 30, 2013)

Review status:2 stars out of maximum of 4 stars

criteria provided, multiple submitters, no conflicts

Based on:
2 submissions [Details]
Record status:
current
Accession:
RCV000039253.3

Allele description [Variation Report for NM_022124.6(CDH23):c.67+12C>T]

NM_022124.6(CDH23):c.67+12C>T

Gene:
CDH23:cadherin related 23 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q22.1
Genomic location:
Preferred name:
NM_022124.6(CDH23):c.67+12C>T
HGVS:
  • NC_000010.11:g.71439910C>T
  • NG_008835.1:g.47964C>T
  • NM_001171930.2:c.67+12C>T
  • NM_001171931.2:c.67+12C>T
  • NM_001171932.2:c.67+12C>T
  • NM_022124.6:c.67+12C>TMANE SELECT
  • NM_052836.4:c.67+12C>T
  • NC_000010.10:g.73199667C>T
  • NM_022124.5:c.67+12C>T
  • c.67+12C>T
Links:
dbSNP: rs74144963
NCBI 1000 Genomes Browser:
rs74144963
Molecular consequence:
  • NM_001171930.2:c.67+12C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001171931.2:c.67+12C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001171932.2:c.67+12C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_022124.6:c.67+12C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_052836.4:c.67+12C>T - intron variant - [Sequence Ontology: SO:0001627]
Observations:
52

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000062937Laboratory for Molecular Medicine, Partners HealthCare Personalized Medicinecriteria provided, single submitter
Benign
(Feb 20, 2012)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV000167632GeneDxcriteria provided, single submitter
Benign
(Apr 30, 2013)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlinenot provided5352not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Partners HealthCare Personalized Medicine, SCV000062937.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided53not providednot providedclinical testing PubMed (1)

Description

67+12C>T in intron 2 of CDH23: This variant is not expected to have clinical sig nificance because it has been identified in 14% (484/3458) of African American c hromosomes from a broad population by the NHLBI Exome Sequencing Project (http:/ /evs.gs.washington.edu/EVS/; dbSNP rs74144963)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided53not provided52not provided

From GeneDx, SCV000167632.10

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 30, 2021

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