NM_002880.4(RAF1):c.576A>G (p.Gln192=) AND not specified

Germline classification:: Benign/Likely benign (3 submissions)
Last evaluated:: Sep 24, 2022
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000037694.9

Allele description [Variation Report for NM_002880.4(RAF1):c.576A>G (p.Gln192=)]

NM_002880.4(RAF1):c.576A>G (p.Gln192=)

Gene:

RAF1:Raf-1 proto-oncogene, serine/threonine kinase [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3p25.2

Genomic location:

Preferred name:

NM_002880.4(RAF1):c.576A>G (p.Gln192=)

Other names:

p.Q192Q

HGVS:

NC_000003.12:g.12608771T>C
NG_007467.1:g.60409A>G
NM_001354689.3:c.576A>G
NM_001354690.3:c.576A>G
NM_001354691.3:c.333A>G
NM_001354692.3:c.333A>G
NM_001354693.3:c.576A>G
NM_001354694.3:c.333A>G
NM_001354695.3:c.333A>G
NM_002880.4:c.576A>GMANE SELECT
NP_001341618.1:p.Gln192=
NP_001341619.1:p.Gln192=
NP_001341620.1:p.Gln111=
NP_001341621.1:p.Gln111=
NP_001341622.1:p.Gln192=
NP_001341623.1:p.Gln111=
NP_001341624.1:p.Gln111=
NP_002871.1:p.Gln192=
NP_002871.1:p.Gln192=
LRG_413t1:c.576A>G
LRG_413t2:c.576A>G
LRG_413:g.60409A>G
LRG_413p1:p.Gln192=
LRG_413p2:p.Gln192=
NC_000003.11:g.12650270T>C
NM_002880.3:c.576A>G
NR_148940.3:n.907A>G
NR_148941.3:n.907A>G
NR_148942.3:n.907A>G
c.576A>G

Links:

dbSNP: rs148759910

NCBI 1000 Genomes Browser:

rs148759910

Molecular consequence:

NR_148940.3:n.907A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148941.3:n.907A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148942.3:n.907A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NM_001354689.3:c.576A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001354690.3:c.576A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001354691.3:c.333A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001354692.3:c.333A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001354693.3:c.576A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001354694.3:c.333A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001354695.3:c.333A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_002880.4:c.576A>G - synonymous variant - [Sequence Ontology: SO:0001819]

Observations:

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000061356	Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine	criteria provided, single submitter (LMM Criteria)	Likely benign (Jan 2, 2015)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV001920638	Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus See additional submitters Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen	no assertion criteria provided	Benign	germline	clinical testing
SCV002598742	Women's Health and Genetics/Laboratory Corporation of America, LabCorp	criteria provided, single submitter (LabCorp Variant Classification Summary - May 2015)	Benign (Sep 24, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000061356

Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine

criteria provided, single submitter

(LMM Criteria)

Likely benign
(Jan 2, 2015)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001920638

Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided

Benign

germline

clinical testing

SCV002598742

Women's Health and Genetics/Laboratory Corporation of America, LabCorp

criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)

Benign
(Sep 24, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	not provided	3	3	not provided	not provided	not provided	clinical testing
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]

PMID:: 24033266
PMCID:: PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000061356.6

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	3	not provided	not provided	clinical testing	PubMed (1)

Description

p.Gln192Gln in exon 5 of RAF1: This variant is not expected to have clinical sig nificance because it does not alter an amino acid residue and is not located nea r a splice junction. It has been identified in 16/67622 of European chromosomes by the Exome Aggregation Consortium (http://exac.broadinstitute.org/; dbSNP rs1 48759910).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	not provided	not provided	not provided	not provided		3	not provided	3	not provided

From Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus, SCV001920638.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV002598742.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Feb 25, 2025

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