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NM_004387.4(NKX2-5):c.73C>T (p.Arg25Cys) AND Congenital heart disease

Germline classification:
Benign (1 submission)
Last evaluated:
Jun 4, 2015
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000030339.4

Allele description [Variation Report for NM_004387.4(NKX2-5):c.73C>T (p.Arg25Cys)]

NM_004387.4(NKX2-5):c.73C>T (p.Arg25Cys)

Gene:
NKX2-5:NK2 homeobox 5 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q35.1
Genomic location:
Preferred name:
NM_004387.4(NKX2-5):c.73C>T (p.Arg25Cys)
Other names:
p.R25C:CGC>TGC
HGVS:
  • NC_000005.10:g.173235011G>A
  • NG_013340.1:g.5302C>T
  • NM_001166175.2:c.73C>T
  • NM_001166176.2:c.73C>T
  • NM_004387.4:c.73C>TMANE SELECT
  • NP_001159647.1:p.Arg25Cys
  • NP_001159648.1:p.Arg25Cys
  • NP_004378.1:p.Arg25Cys
  • LRG_671t1:c.73C>T
  • LRG_671:g.5302C>T
  • LRG_671p1:p.Arg25Cys
  • NC_000005.9:g.172662014G>A
  • NM_004387.3:c.73C>T
  • P52952:p.Arg25Cys
  • c.73C>T
Protein change:
R25C; ARG25CYS
Links:
UniProtKB: P52952#VAR_010116; OMIM: 600584.0004; dbSNP: rs28936670
NCBI 1000 Genomes Browser:
rs28936670
Molecular consequence:
  • NM_001166175.2:c.73C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001166176.2:c.73C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004387.4:c.73C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Congenital heart disease (CHD)
Identifiers:
MONDO: MONDO:0005453; MedGen: C0152021

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000053006Women's Health and Genetics/Laboratory Corporation of America, LabCorp
no assertion criteria provided
Benign
(Jun 4, 2015)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV000053006.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024