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NM_000035.4(ALDOB):c.136A>T (p.Arg46Trp) AND Hereditary fructosuria

Germline classification:
Uncertain significance (5 submissions)
Last evaluated:
Aug 22, 2022
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000023970.7

Allele description [Variation Report for NM_000035.4(ALDOB):c.136A>T (p.Arg46Trp)]

NM_000035.4(ALDOB):c.136A>T (p.Arg46Trp)

Gene:
ALDOB:aldolase, fructose-bisphosphate B [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q31.1
Genomic location:
Preferred name:
NM_000035.4(ALDOB):c.136A>T (p.Arg46Trp)
HGVS:
  • NC_000009.12:g.101429943T>A
  • NG_012387.1:g.10838A>T
  • NM_000035.4:c.136A>TMANE SELECT
  • NP_000026.2:p.Arg46Trp
  • LRG_1244t1:c.136A>T
  • LRG_1244:g.10838A>T
  • LRG_1244p1:p.Arg46Trp
  • NC_000009.11:g.104192225T>A
  • NM_000035.3:c.136A>T
  • P05062:p.Arg46Trp
Protein change:
R46W; ARG46TRP
Links:
UniProtKB: P05062#VAR_075348; OMIM: 612724.0014; dbSNP: rs41281039
NCBI 1000 Genomes Browser:
rs41281039
Molecular consequence:
  • NM_000035.4:c.136A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary fructosuria
Synonyms:
Hereditary fructose intolerance; Fructose-1-phosphate aldolase deficiency; Aldolase B deficiency; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0009249; MedGen: C0016751; Orphanet: 469; OMIM: 229600; Human Phenotype Ontology: HP:0005973

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000045261OMIM
no assertion criteria provided
Pathogenic
(Dec 1, 2010)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

SCV000800621Counsyl
criteria provided, single submitter

(Counsyl Autosomal Recessive and X-Linked Classification Criteria (2018))
Uncertain significance
(Nov 9, 2017)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link,

SCV001573829ATS em Genética Clínica, Universidade Federal do Rio Grande do Sul
no assertion criteria provided
Likely pathogenic
(Mar 18, 2021)
unknownliterature only

PubMed (1)
[See all records that cite this PMID]

SCV002806864Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Jan 11, 2022)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV003441302Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Aug 22, 2022)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedliterature only
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Hereditary fructose intolerance: functional study of two novel ALDOB natural variants and characterization of a partial gene deletion.

Esposito G, Imperato MR, Ieno L, Sorvillo R, Benigno V, Parenti G, Parini R, Vitagliano L, Zagari A, Salvatore F.

Hum Mutat. 2010 Dec;31(12):1294-303. doi: 10.1002/humu.21359. Epub 2010 Nov 16.

PubMed [citation]
PMID:
20848650
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000045261.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a patient with fructose intolerance (HFI; 229600), Esposito et al. (2010) identified a heterozygous 136A-T transversion in exon 3 of the ALDOB gene, resulting in an arg46-to-trp (R46W) substitution in a conserved residue. The mutation was not found in 300 control alleles. A second mutation or deletion in the ALDOB gene was excluded, indicating that the patient was heterozygous for the mutation. The patient had mild hypoglycemia and ketosis after ingestion of fructose and a marked aversion to sweets and fruit. In vitro functional expression assays showed that the R46W variant had 14-fold lower catalytic efficiency for fructose-1-phosphate compared to wildtype, with no apparent change for fructose bisphosphate. Structural analysis showed that the arg46 residue is far from the tetramer interface and has structural flexibility, but loss of the positively charged arg46 residue may alter binding of fructose-1-phosphate. The report emphasized that heterozygous ALDOB mutations may result in symptoms in some patients.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Counsyl, SCV000800621.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From ATS em Genética Clínica, Universidade Federal do Rio Grande do Sul, SCV001573829.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

From Fulgent Genetics, Fulgent Genetics, SCV002806864.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From Invitae, SCV003441302.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)

Description

This sequence change replaces arginine, which is basic and polar, with tryptophan, which is neutral and slightly polar, at codon 46 of the ALDOB protein (p.Arg46Trp). This variant is present in population databases (rs41281039, gnomAD 0.009%). This missense change has been observed in individual(s) with fructose intolerance (PMID: 20848650). ClinVar contains an entry for this variant (Variation ID: 30979). Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Class C0"). Experimental studies have shown that this missense change affects ALDOB function (PMID: 20848650). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 10, 2024