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NM_138694.4(PKHD1):c.107C>T (p.Thr36Met) AND Colorectal cancer, protection against

Germline classification:
protective (1 submission)
Last evaluated:
Mar 1, 2011
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000023566.10

Allele description [Variation Report for NM_138694.4(PKHD1):c.107C>T (p.Thr36Met)]

NM_138694.4(PKHD1):c.107C>T (p.Thr36Met)

Gene:
PKHD1:PKHD1 ciliary IPT domain containing fibrocystin/polyductin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p12.2
Genomic location:
Preferred name:
NM_138694.4(PKHD1):c.107C>T (p.Thr36Met)
HGVS:
  • NC_000006.12:g.52083201G>A
  • NG_008753.1:g.9425C>T
  • NM_138694.4:c.107C>TMANE SELECT
  • NM_170724.3:c.107C>T
  • NP_619639.3:p.Thr36Met
  • NP_619639.3:p.Thr36Met
  • NP_733842.2:p.Thr36Met
  • NC_000006.11:g.51947999G>A
  • NM_138694.3:c.107C>T
  • P08F94:p.Thr36Met
  • c.107C>T (p.Thr36Met)
  • p.T36M
Protein change:
T36M; THR36MET
Links:
UniProtKB: P08F94#VAR_014039; OMIM: 606702.0001; dbSNP: rs137852944
NCBI 1000 Genomes Browser:
rs137852944
Molecular consequence:
  • NM_138694.4:c.107C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_170724.3:c.107C>T - missense variant - [Sequence Ontology: SO:0001583]
Functional consequence:
Decreased function

Condition(s)

Name:
Colorectal cancer, protection against
Identifiers:
MedGen: C3149111

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000044857OMIM
no assertion criteria provided
protective
(Mar 1, 2011)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

The gene mutated in autosomal recessive polycystic kidney disease encodes a large, receptor-like protein.

Ward CJ, Hogan MC, Rossetti S, Walker D, Sneddon T, Wang X, Kubly V, Cunningham JM, Bacallao R, Ishibashi M, Milliner DS, Torres VE, Harris PC.

Nat Genet. 2002 Mar;30(3):259-69. Epub 2002 Feb 4.

PubMed [citation]
PMID:
11919560

Spectrum of mutations in the gene for autosomal recessive polycystic kidney disease (ARPKD/PKHD1).

Bergmann C, Senderek J, Sedlacek B, Pegiazoglou I, Puglia P, Eggermann T, Rudnik-Schöneborn S, Furu L, Onuchic LF, De Baca M, Germino GG, Guay-Woodford L, Somlo S, Moser M, Büttner R, Zerres K.

J Am Soc Nephrol. 2003 Jan;14(1):76-89.

PubMed [citation]
PMID:
12506140
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000044857.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

In a female infant in whom the diagnosis of autosomal recessive polycystic kidney disease (PKD4; 263200) was made in utero, Ward et al. (2002) found a 107C-T transition in exon 3 of the PKHD1 gene resulting in a thr36-to-met (T36M) amino acid substitution in fibrocystin. The infant, who had congenital hepatic fibrosis, required mechanical ventilation at birth and was hypertensive. The patient suffered hematemesis at 3 years of age and had variceal banding.

Bergmann et al. (2003) concluded that the T36M mutation represents a mutation hotspot because it is recurrent and observed in a variety of populations.

Ward et al. (2011) estimated the frequency of T36M to be 3.2% in the European population. Ward et al. (2011) observed an association between the common T36M allele and protection against colorectal cancer (114500). Germline heterozygosity for the mutant allele was found in 0.42% of 3,603 healthy European controls and in 0.027% of 3,767 patients with colorectal cancer (p = 0.0002; odds ratio of 0.072). The authors postulated that reduced fibrocystin activity may enhance mitotic instability, which may inhibit carcinogenesis.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 20, 2024