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NC_012920.1(MT-TC):m.5814T>C AND MELAS syndrome

Germline classification:
Benign (2 submissions)
Last evaluated:
Jul 12, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000022896.3

Allele description [Variation Report for NC_012920.1(MT-TC):m.5814T>C]

NC_012920.1(MT-TC):m.5814T>C

Gene:
MT-TC:mitochondrially encoded tRNA cysteine [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Genomic location:
Preferred name:
NC_012920.1(MT-TC):m.5814T>C
HGVS:
NC_012920.1:m.5814T>C
Nucleotide change:
5814A-G
Links:
OMIM: 590020.0001; dbSNP: rs200077222
NCBI 1000 Genomes Browser:
rs200077222

Condition(s)

Name:
MELAS syndrome (MELAS)
Synonyms:
Mitochondrial encephalomyopathy lactic acidosis and stroke-like episodes; Juvenile myopathy, encephalopathy, lactic acidosis, stroke
Identifiers:
MONDO: MONDO:0010789; MedGen: C0162671; Orphanet: 550; OMIM: 540000

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000044187OMIM
no assertion criteria provided
Pathogenic
(May 1, 1997)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

SCV000993094Wong Mito Lab, Molecular and Human Genetics, Baylor College of Medicine
criteria provided, single submitter

(Modified ACMG Guidelines (Unpublished))
Benign
(Jul 12, 2019)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Identification of a mutation in the mitochondrial tRNA(Cys) gene associated with mitochondrial encephalopathy.

Manfredi G, Schon EA, Bonilla E, Moraes CT, Shanske S, DiMauro S.

Hum Mutat. 1996;7(2):158-63. No abstract available.

PubMed [citation]
PMID:
8829635

Mitochondrial tRNA(Cys) gene mutation (A5814G): a second family with mitochondrial encephalopathy.

Santorelli FM, Siciliano G, Casali C, Basirico MG, Carrozzo R, Calvosa F, Sartucci F, Bonfiglio L, Murri L, DiMauro S.

Neuromuscul Disord. 1997 May;7(3):156-9.

PubMed [citation]
PMID:
9185178
See all PubMed Citations (4)

Details of each submission

From OMIM, SCV000044187.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In a 5-year-old girl of Portuguese origin who presented with MELAS (540000) symptoms at age 3, Manfredi et al. (1996) identified a heteroplasmic 5814A-G transition in the MTTC gene within the D-stem. The mutation load in muscle and blood was high, above 90%, although analysis of individual muscle fibers showed a mutation load of 74 to 95%. The mutation was not found in 50 controls. The patient had episodic vomiting, lactic acidosis, seizures, and hemiparesis. Brain MRI showed diffuse white matter abnormalities in the frontal lobes and basal ganglia. However, ragged-red fibers were not noted on muscle biopsies, leading Manfredi et al. (1996) to use the term 'MELAS-like" to describe the phenotype.

The same group (Santorelli et al., 1997) identified the 5814A-G mutation in an Italian family with a maternally inherited encephalomyopathy including progressive external ophthalmoplegia, seizures, and neurophysiologic evidence of brainstem dysfunction. The proband was a 33-year-old woman who had normal development until adolescence, when she complained of easy fatigability and developed limitations of eye movements. By age 27, she also had hearing impairment, unsteady gait, hyporeflexia, nystagmus, and lactic acidosis. Brain MRI showed hyperintensities in the corpus callosum, posterior wall of the third ventricle, and brainstem. She later developed myoclonic jerks and generalized tonic-clonic seizures. Muscle biopsy showed ragged-red fibers and echocardiography showed abnormal repolarization and mild hypertrophy of the interventricular septum. She became ventilator-dependent and bedridden, and died at age 33. The mutation load was 96% in blood and 98% in muscle. Three maternal relatives also carried the mutation: the mother had moderate bradykinesia (mutation load of 88%), asymptomatic brother (74%), and teenage daughter (92%). All 3 relatives had abnormal neurophysiologic activity in the brainstem.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Wong Mito Lab, Molecular and Human Genetics, Baylor College of Medicine, SCV000993094.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)

Description

The NC_012920.1:m.5814T>C variant in MT-TC gene is interpreted to be a Benign variant based on the modified ACMG guidelines (unpublished). This variant meets the following evidence codes reported in the guidelines: BS1, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 30, 2024