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NM_000186.4(CFH):c.3628C>T (p.Arg1210Cys) AND Age related macular degeneration 4

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Aug 9, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000022540.12

Allele description [Variation Report for NM_000186.4(CFH):c.3628C>T (p.Arg1210Cys)]

NM_000186.4(CFH):c.3628C>T (p.Arg1210Cys)

Gene:
CFH:complement factor H [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q31.3
Genomic location:
Preferred name:
NM_000186.4(CFH):c.3628C>T (p.Arg1210Cys)
HGVS:
  • NC_000001.11:g.196747245C>T
  • NG_007259.1:g.100235C>T
  • NM_000186.4:c.3628C>TMANE SELECT
  • NP_000177.2:p.Arg1210Cys
  • NP_000177.2:p.Arg1210Cys
  • LRG_47t1:c.3628C>T
  • LRG_47:g.100235C>T
  • LRG_47p1:p.Arg1210Cys
  • NC_000001.10:g.196716375C>T
  • NM_000186.3:c.3628C>T
  • NM_000186.4:c.3628C>T
  • p.Arg1210Cys
Protein change:
R1210C; ARG1210CYS
Links:
OMIM: 134370.0017; dbSNP: rs121913059
NCBI 1000 Genomes Browser:
rs121913059
Molecular consequence:
  • NM_000186.4:c.3628C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Age related macular degeneration 4
Identifiers:
MONDO: MONDO:0012540; MedGen: C1853147; OMIM: 610698

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000043829OMIM
no assertion criteria provided
risk factor
(Jul 1, 2015)
germlineliterature only

PubMed (5)
[See all records that cite these PMIDs]

SCV000915378Illumina Laboratory Services, Illumina
criteria provided, single submitter

(ICSL Variant Classification Criteria 09 May 2019)
Pathogenic
(Aug 9, 2018)
germlineclinical testing

PubMed (5)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Primary glomerulonephritis with isolated C3 deposits: a new entity which shares common genetic risk factors with haemolytic uraemic syndrome.

Servais A, Frémeaux-Bacchi V, Lequintrec M, Salomon R, Blouin J, Knebelmann B, Grünfeld JP, Lesavre P, Noël LH, Fakhouri F.

J Med Genet. 2007 Mar;44(3):193-9. Epub 2006 Oct 3.

PubMed [citation]
PMID:
17018561
PMCID:
PMC2598029

Phenotypic Characterization of Complement Factor H R1210C Rare Genetic Variant in Age-Related Macular Degeneration.

Ferrara D, Seddon JM.

JAMA Ophthalmol. 2015 Jul;133(7):785-91. doi: 10.1001/jamaophthalmol.2015.0814.

PubMed [citation]
PMID:
25880396
PMCID:
PMC6516461
See all PubMed Citations (7)

Details of each submission

From OMIM, SCV000043829.7

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (5)

Description

Complement Component H Deficiency

In a patient with complement factor H deficiency (CFHD; 609814), Servais et al. (2007) identified a heterozygous mutation in the CFH gene, resulting in an arg1210-to-cys (R1210C) substitution in the SCR20 region. The patient developed glomerulonephritis with isolated C3 deposits.

Atypical Hemolytic Uremic Syndrome 1, Susceptibility To

Manuelian et al. (2003) reported a patient with atypical hemolytic uremic syndrome (AHUS1; 235400) in whom they identified a heterozygous 3701C-T transition in the CFH gene, resulting in the R1210C substitution. In vitro functional expression studies showed that the mutant protein had decreased binding to heparin, C3b/C3d, and human endothelial cells.

Age-Related Macular Degeneration 4, Susceptibility To

Raychaudhuri et al. (2011) phased genotypes for 20 common SNPs spanning the CFH-CFHR1-CFHR3 region and a common CFHR1-CFHR3 deletion in 711 individuals with advanced age-related macular degeneration (see ARMD4; 610698) and 1,041 controls, and identified a rare high-risk haplotype ('H5') that lacked both the Y402H (134370.0008) and rs10737680-rs1410996 (134370.0016) risk alleles, but contained the R1210C substitution. Genotyping R1210C in 2,423 ARMD cases and 1,122 controls demonstrated high penetrance (present in 40 cases vs 1 control; p = 7.0 x 10(-6)) and an association with a 6-year-earlier onset of disease (p = 2.3 x 10(-6)). Because R1210C is known to cause familial renal disease, Raychaudhuri et al. (2011) assessed renal function in 17 unrelated R1210C heterozygotes with advanced ARMD but found no evidence of clinically significant renal dysfunction; in addition, comparing renal function in the R1210C heterozygotes to that of 17 ARMD patients matched for disease severity, age, and gender, but without R1210C, there was no significant difference.

Zhan et al. (2013) sequenced 2,335 ARMD cases and 789 controls in 10 candidate loci (57 genes) and then augmented their control set with ancestry-matched exome-sequenced controls. An analysis of coding variation in 2,268 ARMD cases and 2,268 ancestry-matched controls identified 2 large-effect rare variants: R1210C in the CFH gene, with a case frequency of 0.51%, control frequency of 0.02%, and odds ratio of 23.11; and K155Q in the C3 gene (120700.0010), with a case frequency of 1.06%, control frequency of 0.39%, and odds ratio of 2.68. The variants suggested decreased inhibition of C3 by CFH, resulting in increased activation of the alternative complement pathway, as a key component of disease biology.

Ferrara and Seddon (2015) analyzed images from a total of 143 ARMD patients (283 eyes), including 62 patients with the R1210C variant. Patients with the R1210C variant compared to those without this variant had the highest level of macular and total macular drusen scores (57.9% vs 16.7% and 52.0% vs 14.2%, respectively; p less than .001 for both scores) as well as a greater likelihood of having advanced disease (odds ratio, 7.0; 95% CI, 3.1-16.2; p less than .001). A higher prevalence of geographic atrophy was observed among patients carrying the R1210C variant (odds ratio, 13.7%; 95% CI, 5.0-37.7; p less than .001).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Illumina Laboratory Services, Illumina, SCV000915378.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (5)

Description

Across a selection of the available literature, the CFH c.3628C>T (p.Arg1210Cys) missense variant has been identified in a heterozygous state in at least 70 patients with macular degeneration (Raychaundhuri et al. 2011; Zhan et al. 2013; Seddon et al. 2014; Duvvari et al. 2015). The p.Arg1210Cys variant was reported in a heterozygous state in two out of over 4,480 controls and is reported at a frequency of 0.00031 in the European (non-Finnish) population of the Genome Aggregation Database. Functional analysis of the p.Arg1210Cys variant using serum from a heterozygous individual as well as recombinant factor H protein suggests this variant reduces the binding of factor H to various ligands including heparin, endothelial cells, and Cb3 (Manuelian et al. 2003). Based on the collective evidence, the p.Arg1210Cys variant is classified as pathogenic for macular degeneration. This variant was observed by ICSL as part of a predisposition screen in an ostensibly healthy population.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 16, 2024