NM_194248.3(OTOF):c.3189G>A (p.Ala1063=) AND Deafness, autosomal recessive 9

Clinical significance:Uncertain significance (Last evaluated: Jan 13, 2018)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
2 submissions [Details]
Record status:
current
Accession:
RCV000021055.3

Allele description [Variation Report for NM_194248.3(OTOF):c.3189G>A (p.Ala1063=)]

NM_194248.3(OTOF):c.3189G>A (p.Ala1063=)

Gene:
OTOF:otoferlin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p23.3
Genomic location:
Preferred name:
NM_194248.3(OTOF):c.3189G>A (p.Ala1063=)
HGVS:
  • NC_000002.12:g.26474612C>T
  • NG_009937.1:g.89087G>A
  • NM_001287489.2:c.3189G>A
  • NM_004802.4:c.948G>A
  • NM_194248.3:c.3189G>AMANE SELECT
  • NM_194322.3:c.1119G>A
  • NM_194323.3:c.948G>A
  • NP_001274418.1:p.Ala1063=
  • NP_004793.2:p.Ala316=
  • NP_919224.1:p.Ala1063=
  • NP_919303.1:p.Ala373=
  • NP_919304.1:p.Ala316=
  • NC_000002.11:g.26697480C>T
  • NM_194248.1:c.3189G>A
  • NM_194248.2:c.3189G>A
  • c.3189G>A
  • p.Ala1063Ala
Links:
dbSNP: rs80356573
NCBI 1000 Genomes Browser:
rs80356573
Molecular consequence:
  • NM_001287489.2:c.3189G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_004802.4:c.948G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_194248.3:c.3189G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_194322.3:c.1119G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_194323.3:c.948G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Deafness, autosomal recessive 9 (DFNB9)
Synonyms:
NEUROSENSORY NONSYNDROMIC RECESSIVE DEAFNESS 9; AUDITORY NEUROPATHY, AUTOSOMAL RECESSIVE, 1, TEMPERATURE-SENSITIVE; OTOF-Related Deafness
Identifiers:
MONDO: MONDO:0010986; MedGen: C1832828; Orphanet: 90636; OMIM: 601071

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000041710GeneReviewsno assertion criteria providedbenign
(Apr 26, 2011)
not providedcuration

SCV000429610Illumina Clinical Services Laboratory,Illuminacriteria provided, single submitter
Uncertain significance
(Jan 13, 2018)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providednot providednot providednot providednot providednot providednot providednot providedcuration

Details of each submission

From GeneReviews, SCV000041710.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcurationnot provided

Description

Converted during submission to Benign.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1not providednot providednot providednot providedAssert pathogenicitynot providednot providednot providednot provided

From Illumina Clinical Services Laboratory,Illumina, SCV000429610.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2021

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