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NM_000041.2(APOE):c.526C>T (p.Arg176Cys) AND Familial type 3 hyperlipoproteinemia

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Oct 1, 2005
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000019428.38

Allele description [Variation Report for NM_000041.2(APOE):c.526C>T (p.Arg176Cys)]

NM_000041.2(APOE):c.526C>T (p.Arg176Cys)

Gene:
APOE:apolipoprotein E [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.32
Genomic location:
Preferred name:
NM_000041.2(APOE):c.526C>T (p.Arg176Cys)
Other names:
R158C; R148C
HGVS:
  • NC_000019.10:g.44908822C>T
  • NG_007084.2:g.8041C>T
  • NM_000041.4:c.526C>TMANE SELECT
  • NM_001302688.2:c.604C>T
  • NM_001302689.2:c.526C>T
  • NM_001302690.2:c.526C>T
  • NM_001302691.2:c.526C>T
  • NP_000032.1:p.Arg176Cys
  • NP_001289617.1:p.Arg202Cys
  • NP_001289618.1:p.Arg176Cys
  • NP_001289619.1:p.Arg176Cys
  • NP_001289620.1:p.Arg176Cys
  • NC_000019.9:g.45412079C>T
  • NM_000041.2:c.526C>T
  • NM_000041.3:c.526C>T
  • P02649:p.Arg176Cys
Protein change:
R176C; ARG148CYS
Links:
PharmGKB: 1183492249; PharmGKB: 1183492249PA448500; PharmGKB Clinical Annotation: 1183492249; UniProtKB: P02649#VAR_000664; OMIM: 107741.0001; OMIM: 107741.0009; OMIM: 107741.0019; OMIM: 107741.0021; dbSNP: rs7412
NCBI 1000 Genomes Browser:
rs7412
Molecular consequence:
  • NM_000041.4:c.526C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001302688.2:c.604C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001302689.2:c.526C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001302690.2:c.526C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001302691.2:c.526C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Familial type 3 hyperlipoproteinemia
Synonyms:
Hyperlipoproteinemia type 3; Hyperlipoproteinemia type III; Dysbetalipoproteinemia; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0018473; MedGen: C0020479; OMIM: 617347

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000039717OMIM
no assertion criteria provided
Pathogenic
(Oct 1, 2005)
germlineliterature only

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Identical structural and receptor binding defects in apolipoprotein E2 in hypo-, normo-, and hypercholesterolemic dysbetalipoproteinemia.

Rall SC Jr, Weisgraber KH, Innerarity TL, Mahley RW.

J Clin Invest. 1983 Apr;71(4):1023-31.

PubMed [citation]
PMID:
6300187
PMCID:
PMC436959

Isolation and characterisation of a variant allele of the gene for human apolipoprotein E.

Gill LL, Peoples OP, Pearston DH, Robertson FW, Humphries SE, Cumming AM, Hardman N.

Biochem Biophys Res Commun. 1985 Aug 15;130(3):1261-6.

PubMed [citation]
PMID:
2992507
See all PubMed Citations (5)

Details of each submission

From OMIM, SCV000039717.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (5)

Description

Apolipoprotein E2 exists in 2 main isoforms, arg158 and cys158 (Rall et al., 1982; Gill et al., 1985). The second isoform (arg158-to-cys; R158C) was found in 98 of 100 E2 alleles by Emi et al. (1988). The other isoforms that give a band at the E2 position with isoelectric focusing include E2(lys146-to-gln) (107741.0011) and E2(arg145-to-cys; 107741.0004). Type III hyperlipoproteinemia is typically associated with homozygosity for a change in apolipoprotein E2 from arg158 to cys.

By generating mice with a human APOE*2 allele in place of the mouse Apoe gene via targeted gene replacement in embryonic stem cells, Sullivan et al. (1998) demonstrated that a single amino acid difference (R158C) in the APOE protein is sufficient to cause type III hyperlipoproteinemia and spontaneous atherosclerosis in mice. Mice expressing human APOE2 (2/2) had virtually all the characteristics of type III hyperlipoproteinemia. Both their plasma cholesterol and triglyceride levels were 2 to 3 times those in normolipidemic mice that expressed human APOE3 (3/3) generated in an identical manner. The 2/2 mice were markedly defective in clearing beta-migrating VLDL particles and spontaneously developed atherosclerotic plaques, even on a regular diet. An atherogenic diet, high in fat and cholesterol, exacerbated development of atherosclerosis and xanthomas in the 2/2 mice.

In 72 patients with type III hyperlipidemia (617347) and the APOE 2/2 genotype, Evans et al. (2005) found a significantly higher frequency for at least 1 minor allele of the APOA5 -1131T-C and S19W (606368.0002) SNPs in patients than in controls (53% vs 19.7%, respectively; p = 0.0001). Evans et al. (2005) concluded that genetic variation in the APOA5 gene is an important cofactor in the development of type III hyperlipidemia.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 20, 2024