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NM_000342.3(SLC4A1):c.1462G>A (p.Val488Met) AND Renal tubular acidosis, distal, with hemolytic anemia

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 15, 2000
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000019351.25

Allele description

NM_000342.3(SLC4A1):c.1462G>A (p.Val488Met)

Gene:
SLC4A1:solute carrier family 4 member 1 (Diego blood group) [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17q21.31
Genomic location:
Preferred name:
NM_000342.3(SLC4A1):c.1462G>A (p.Val488Met)
HGVS:
  • NC_000017.11:g.44257514C>T
  • NG_007498.1:g.15621G>A
  • NM_000342.4:c.1462G>AMANE SELECT
  • NP_000333.1:p.Val488Met
  • NC_000017.10:g.42334882C>T
  • NM_000342.2:c.1462G>A
  • P02730:p.Val488Met
Protein change:
V488M; VAL488MET
Links:
UniProtKB: P02730#VAR_013791; OMIM: 109270.0022; dbSNP: rs28931584
NCBI 1000 Genomes Browser:
rs28931584
Molecular consequence:
  • NM_000342.4:c.1462G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Renal tubular acidosis, distal, with hemolytic anemia
Synonyms:
RTA, DISTAL, AUTOSOMAL RECESSIVE, WITH HEMOLYTIC ANEMIA
Identifiers:
MONDO: MONDO:0012700; MedGen: C1969038; Orphanet: 93610; OMIM: 611590

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000039641OMIM
no assertion criteria provided
Pathogenic
(Aug 15, 2000)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Modulation of clinical expression and band 3 deficiency in hereditary spherocytosis.

Alloisio N, Texier P, Vallier A, Ribeiro ML, Morlé L, Bozon M, Bursaux E, Maillet P, Gonçalves P, Tanner MJ, Tamagnini G, Delaunay J.

Blood. 1997 Jul 1;90(1):414-20.

PubMed [citation]
PMID:
9207478

Severe hereditary spherocytosis and distal renal tubular acidosis associated with the total absence of band 3.

Ribeiro ML, Alloisio N, Almeida H, Gomes C, Texier P, Lemos C, Mimoso G, Morlé L, Bey-Cabet F, Rudigoz RC, Delaunay J, Tamagnini G.

Blood. 2000 Aug 15;96(4):1602-4.

PubMed [citation]
PMID:
10942416

Details of each submission

From OMIM, SCV000039641.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In the heterozygous state, band-3 Coimbra causes typical hereditary spherocytosis (SPH4; 612653) and is associated with partial deficiency of band-3 and, as a secondary phenomenon, of protein 4.2 (177070) (Alloisio et al., 1997). Band 3 Coimbra is caused by a GTG-to-ATG change in exon 13 of the SLC4A1 gene, resulting in a val488-to-met substitution.

Ribeiro et al. (2000) reported severe hereditary spherocytosis and renal tubular acidosis (611590) associated with total absence of band-3 in an infant homozygous for the Coimbra mutation. Because the fetus stopped moving near term, an emergency cesarean section was performed and a severely anemic, hydropic female baby was delivered. She was resuscitated and initially kept alive with respiratory assistance and hypertransfusion therapy. Band 3 and protein 4.2 were absent; spectrin, ankyrin, and glycophorin A were significantly reduced. Renal tubular acidosis was detected by the age of 3 months. Nephrocalcinosis appeared soon thereafter. With regular blood transfusions and daily bicarbonate supplements, the child was doing 'reasonably well' at the age of 3 years.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 18, 2020