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NM_000089.4(COL1A2):c.2123G>A (p.Arg708Gln) AND Marfan syndrome, atypical

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jun 1, 2004
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000018790.13

Allele description [Variation Report for NM_000089.4(COL1A2):c.2123G>A (p.Arg708Gln)]

NM_000089.4(COL1A2):c.2123G>A (p.Arg708Gln)

Gene:
COL1A2:collagen type I alpha 2 chain [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q21.3
Genomic location:
Preferred name:
NM_000089.4(COL1A2):c.2123G>A (p.Arg708Gln)
Other names:
R618Q
HGVS:
  • NC_000007.14:g.94420276G>A
  • NG_007405.1:g.30716G>A
  • NM_000089.4:c.2123G>AMANE SELECT
  • NP_000080.2:p.Arg708Gln
  • NP_000080.2:p.Arg708Gln
  • LRG_2t1:c.2123G>A
  • LRG_2:g.30716G>A
  • LRG_2p1:p.Arg708Gln
  • NC_000007.13:g.94049588G>A
  • NM_000089.3:c.2123G>A
  • P08123:p.Arg708Gln
Protein change:
R708Q; ARG618GLN
Links:
UniProtKB: P08123#VAR_001876; OMIM: 120160.0020; dbSNP: rs72658163
NCBI 1000 Genomes Browser:
rs72658163
Molecular consequence:
  • NM_000089.4:c.2123G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Marfan syndrome, atypical
Identifiers:
MedGen: C4016055

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000039073OMIM
no assertion criteria provided
Uncertain significance
(Jun 1, 2004)
germlineliterature only

PubMed (4)
[See all records that cite these PMIDs]

Byers, P. H. Personal Communication. 2002. Seattle, Wa.

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A 38 base pair insertion in the pro alpha 2(I) collagen gene of a patient with Marfan syndrome.

Henke E, Leader M, Tajima S, Pinnell S, Kaufman R.

J Cell Biochem. 1985;27(2):169-74.

PubMed [citation]
PMID:
2985635

The Human Collagen Mutation Database 1998.

Dalgleish R.

Nucleic Acids Res. 1998 Jan 1;26(1):253-5.

PubMed [citation]
PMID:
9399846
PMCID:
PMC147171
See all PubMed Citations (4)

Details of each submission

From OMIM, SCV000039073.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (4)

Description

This variant, formerly titled MARFAN SYNDROME, ATYPICAL or MARFAN SYNDROME VARIANT, has been reclassified based on the findings of Forlino et al. (1998) and Vomund et al. (2004).

Byers et al. (1981) found 2 species of the alpha-2 chain of type I collagen in 1 of 11 Marfan patients studied; one of the alpha-2 chains was normal whereas the other contained a 20-amino acid insertion in the amino-terminal propeptide. This alteration in chain size probably accounted for the 5- to 10-fold increase in collagen extraction into nondenaturing solvents from this patient's skin compared to controls. The patient of Byers et al. (1981) was a 39-year-old woman who had unaffected parents and 2 unaffected sibs. Features were equinovarus deformities of both feet at birth; arachnodactyly first noted at age 9 and lumbar scoliosis and heart murmur first noted at age 10. Aortic and mitral regurgitation with dilated root of the aorta prompted surgical replacement of the aortic valve and a portion of the ascending aorta at age 37. Her height was 164.5 cm, span 178 cm, upper segment to lower segment ratio 0.80. No lens dislocation was detected. She showed bluish-gray sclerae and mild myopia. Mild pectus carinatum was present, as well as long slender limbs with increased mobility in all joints except the fourth and fifth fingers which bilaterally showed marked camptodactyly. Henke et al. (1985) suggested that there was a 38-basepair insertion in the COL1A2 gene that caused the Marfan syndrome. Dalgleish et al. (1986) found, however, that this is a common polymorphism of the COL1A2 gene. Among 28 normal persons, 12 were homozygous for the large oligo, 12 were heterozygous, and 4 were homozygous for the small oligo. Phillips et al. (1990) further studied the patient and demonstrated a single base change, resulting in substitution of arginine-618 by glutamine at the Y position of a Gly-X-Y repeat. Family studies indicated that the substitution was inherited from the patient's father who also produced abnormally migrating pro-alpha-2(I) collagen chains and shared some of the abnormal skeletal features. The single base change at nucleotide 2258 resulted in a new Bsu36I (SauI, MstII) restriction site detectable in genomic DNA by Southern blot analysis when probed with a COL1A2 fragment. Analyses of 103 chromosomes in 52 controlled individuals were negative for the new site, indicating that the substitution is not a common polymorphism.

Forlino et al. (1998) identified the R618Q variant and a gly421-to-asp mutation (G421D; 120160.0053) in cis in a patient with lethal osteogenesis imperfecta (166210). The patient's unaffected father also carried the R618Q variant. Forlino et al. (1998) determined that the R618Q variant resulted in only mild electrophoretic delay. They suggested that G421D was the causative mutation and that R618Q is a rare variant.

Vomund et al. (2004) analyzed the helical stability and fibrillar assembly of type I collagen from cultured dermal fibroblasts of controls and 2 unrelated individuals heterozygous for the R618Q variant. They found that the thermal stability of the R618Q-containing collagen molecules did not differ statistically from control molecules, but that the diameter of assembled R618Q-containing collagen fibrils was approximately 20% of control collagen fibrils. Vomund et al. (2004) suggested that while the R618Q variant does not impact triple-helical stability, it does impact collagen fibril assembly and may therefore have a role as a modifier in disease pathogenesis.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jan 19, 2025