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NM_000518.5(HBB):c.5T>G (p.Val2Gly) AND HEMOGLOBIN WATFORD

Germline classification:
other (1 submission)
Last evaluated:
Dec 12, 2017
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000016854.3

Allele description [Variation Report for NM_000518.5(HBB):c.5T>G (p.Val2Gly)]

NM_000518.5(HBB):c.5T>G (p.Val2Gly)

Genes:
LOC106099062:HBB recombination region [Gene]
HBB:hemoglobin subunit beta [Gene - OMIM - HGNC]
LOC107133510:origin of replication at HBB [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.4
Genomic location:
Preferred name:
NM_000518.5(HBB):c.5T>G (p.Val2Gly)
Other names:
V1G
HGVS:
  • NC_000011.10:g.5227017A>C
  • NG_000007.3:g.70599T>G
  • NG_042296.1:g.548A>C
  • NG_046672.1:g.4952A>C
  • NG_059281.1:g.5055T>G
  • NM_000518.5:c.5T>GMANE SELECT
  • NP_000509.1:p.Val2Gly
  • LRG_1232t1:c.5T>G
  • LRG_1232:g.5055T>G
  • LRG_1232p1:p.Val2Gly
  • NC_000011.9:g.5248247A>C
Protein change:
V2G; VAL1GLY
Links:
OMIM: 141900.0497; dbSNP: rs33949930
NCBI 1000 Genomes Browser:
rs33949930
Molecular consequence:
  • NM_000518.5:c.5T>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
HEMOGLOBIN WATFORD
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000037124OMIM
no assertion criteria provided
other
(Dec 12, 2017)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Hb Watford [beta1(NA1)Val-->Gly]: a new, clinically silent hemoglobin variant in linkage with a new neutral mutation.

Fisher C, Hanslip J, Green BN, Gupta V, Old JM, Rees DC.

Hemoglobin. 2000 Nov;24(4):347-53. No abstract available.

PubMed [citation]
PMID:
11186267

Details of each submission

From OMIM, SCV000037124.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

Four hemoglobin variants had previously been described that involve the first codon of the HBB gene: Hb Doha (141900.0069), Hb South Florida (141900.0266), Hb Niigata (141900.0471), and Hb Raleigh (141900.0233). Although none of these variants cause any significant clinical problems, mutations of the first codon are of interest because of their potential interference with cotranslational modification at this site during beta-globin synthesis. In eukaryotes, the translation of all peptide mRNAs starts at an AUG codon, producing methionine at the beginning of the nascent peptide chain. In most proteins, including alpha-, beta-, and gamma-globin, this methionine is cotranslationally cleaved when the chain is 20 to 30 amino acids long. This results in the first amino acid being valine in alpha-, beta-, and delta-globin, and glycine in gamma-globin. When the peptide chain is 40 to 50 amino acids long, further modification occurs with acetylation at the NH2-terminal residue. The extent of the acetylation depends on the identity of the N-terminal amino acid; valine is strongly inhibitory to this process, leading to little acetylation of alpha- and beta-globin. However, the N-terminal glycine of gamma-globin is less inhibitory, resulting in about 15% acetylation. Fisher et al. (2000) identified a new Hb variant, Hb Watford, in which a GTG-to-GGG substitution caused a change of the first amino acid of the beta-globin chain from methionine to glycine, mimicking the gamma-globin chain. The proband was a 48-year-old female of Jewish extraction who was evaluated for chronic mild anemia. Another mutation was found in cis with the val1-to-gly mutation: Cap+36G-A.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022