U.S. flag

An official website of the United States government

NM_000454.5(SOD1):c.242A>G (p.His81Arg) AND Amyotrophic lateral sclerosis type 1

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Oct 5, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000015905.33

Allele description [Variation Report for NM_000454.5(SOD1):c.242A>G (p.His81Arg)]

NM_000454.5(SOD1):c.242A>G (p.His81Arg)

Gene:
SOD1:superoxide dismutase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
21q22.11
Genomic location:
Preferred name:
NM_000454.5(SOD1):c.242A>G (p.His81Arg)
Other names:
H80R
HGVS:
  • NC_000021.9:g.31667260A>G
  • NG_008689.1:g.12639A>G
  • NM_000454.5:c.242A>GMANE SELECT
  • NP_000445.1:p.His81Arg
  • LRG_652:g.12639A>G
  • NC_000021.8:g.33039573A>G
Protein change:
H81R; HIS80ARG
Links:
OMIM: 147450.0031; dbSNP: rs121912458
NCBI 1000 Genomes Browser:
rs121912458
Molecular consequence:
  • NM_000454.5:c.242A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Amyotrophic lateral sclerosis type 1 (ALS1)
Synonyms:
AMYOTROPHIC LATERAL SCLEROSIS 1, FAMILIAL
Identifiers:
MONDO: MONDO:0007103; MedGen: C1862939; Orphanet: 803; OMIM: 105400

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000036172OMIM
no assertion criteria provided
Pathogenic
(Nov 1, 2002)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

SCV001584188Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Pathogenic
(Oct 5, 2020)
germlineclinical testing

PubMed (6)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Familial ALS-superoxide dismutases associate with mitochondria and shift their redox potentials.

Ferri A, Cozzolino M, Crosio C, Nencini M, Casciati A, Gralla EB, Rotilio G, Valentine JS, Carrì MT.

Proc Natl Acad Sci U S A. 2006 Sep 12;103(37):13860-5. Epub 2006 Aug 30.

PubMed [citation]
PMID:
16945901
PMCID:
PMC1557633

Variation in aggregation propensities among ALS-associated variants of SOD1: correlation to human disease.

Prudencio M, Hart PJ, Borchelt DR, Andersen PM.

Hum Mol Genet. 2009 Sep 1;18(17):3217-26. doi: 10.1093/hmg/ddp260. Epub 2009 May 30.

PubMed [citation]
PMID:
19483195
PMCID:
PMC2722984
See all PubMed Citations (6)

Details of each submission

From OMIM, SCV000036172.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a 24-year-old man with sporadic ALS (105400), Alexander et al. (2002) identified a heterozygous 112A-G transition in exon 4 of the SOD1 gene, resulting in a his80-to-arg (H80R) substitution. The patient presented with a 4-month history of left leg weakness, and developed rapidly progressive weakness in all 4 limbs and bulbar musculature, manifesting as quadriplegia, dysarthria, and dysphagia over the subsequent 8 months. He died from pneumonia 18 months after the onset of symptoms. Neuropathologic examination showed anterior horn cell degeneration, prominent gliosis, and Bunina bodies in both the spinal cord and brain stem. There was no involvement of the corticospinal tract. Ubiquitinated inclusions were demonstrated within anterior horn cells, and SOD1-immunoreactive inclusions were identified. There was no family history of any form of neuromuscular disorder. His parents, maternal grandfather, and 2 sibs did not carry the mutation, and it was not identified in 150 unaffected Irish controls. (Alexander et al. (2002) reported the mutation as histidine to arginine at codon 80, but incorrectly symbolized the mutation as H80A.)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Invitae, SCV001584188.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (6)

Description

For these reasons, this variant has been classified as Pathogenic. Experimental studies have shown that this variant affects SOD1 protein function (PMID: 16945901, 19483195, 20515040, 23280792). This variant has been observed in individual(s) with amyotrophic lateral sclerosis (PMID: 12402272). In at least one individual the variant was observed to be de novo. This variant is also known as His80Arg. ClinVar contains an entry for this variant (Variation ID: 14782). This variant is not present in population databases (ExAC no frequency). This sequence change replaces histidine with arginine at codon 81 of the SOD1 protein (p.His81Arg). The histidine residue is highly conserved and there is a small physicochemical difference between histidine and arginine.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 20, 2024