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NM_001366110.1(PAX4):c.385C>T (p.Arg129Trp) AND Type 2 diabetes mellitus

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 1, 2001
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000014800.28

Allele description [Variation Report for NM_001366110.1(PAX4):c.385C>T (p.Arg129Trp)]

NM_001366110.1(PAX4):c.385C>T (p.Arg129Trp)

Gene:
PAX4:paired box 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q32.1
Genomic location:
Preferred name:
NM_001366110.1(PAX4):c.385C>T (p.Arg129Trp)
Other names:
R121W
HGVS:
  • NC_000007.14:g.127614533G>A
  • NG_012848.1:g.6194C>T
  • NM_001366110.1:c.385C>TMANE SELECT
  • NM_001366111.1:c.385C>T
  • NP_001353039.1:p.Arg129Trp
  • NP_001353040.1:p.Arg129Trp
  • NC_000007.13:g.127254587G>A
Protein change:
R129W; ARG121TRP
Links:
OMIM: 167413.0001; dbSNP: rs114202595
NCBI 1000 Genomes Browser:
rs114202595
Molecular consequence:
  • NM_001366110.1:c.385C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001366111.1:c.385C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Type 2 diabetes mellitus
Synonyms:
DIABETES MELLITUS, TYPE 2, PROTECTION AGAINST; Type II diabetes mellitus; Diabetes mellitus, noninsulin-dependent, late onset
Identifiers:
MONDO: MONDO:0005148; MeSH: D003924; MedGen: C0011860; OMIM: 125853; Human Phenotype Ontology: HP:0005978

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000035055OMIM
no assertion criteria provided
Pathogenic
(Dec 1, 2001)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A missense mutation of Pax4 gene (R121W) is associated with type 2 diabetes in Japanese.

Shimajiri Y, Sanke T, Furuta H, Hanabusa T, Nakagawa T, Fujitani Y, Kajimoto Y, Takasu N, Nanjo K.

Diabetes. 2001 Dec;50(12):2864-9.

PubMed [citation]
PMID:
11723072

Details of each submission

From OMIM, SCV000035055.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

Shimajiri et al. (2001) scanned the PAX4 gene in 200 unrelated Japanese probands with type 2 diabetes mellitus (T2D; 125853) and identified a C-T transition in exon 3, resulting in an arg121-to-trp (R121W) substitution in the PAX4 paired domain, in 6 heterozygous probands and 1 homozygous proband (mutant allele frequency 2.0%). The mutation was not found in 161 nondiabetic subjects (p = 0.01). There was a family history of diabetes or impaired glucose tolerance in 6 of the 7 mutation-positive probands. Age at diagnosis ranged from 29 to 49 years, and 4 of 7 had transient insulin therapy at the onset. The homozygous proband was a 44-year-old woman who presented at age 29 years with weight loss, fatigue, polydipsia, and polyuria, and was found to be hyperglycemic but was negative for islet cell antibodies or urine ketone bodies; she required insulin therapy within a year after diagnosis. Her mother, who was heterozygous for the mutation, had impaired glucose tolerance; oral glucose tolerance tests in her clinically asymptomatic heterozygous father and sister as well as another heterozygous carrier, son of a mutation-positive diabetic mother, showed significantly lower insulin-to-glucose ratios than those of controls (p less than 0.001). In functional studies, the R121W mutation showed 92% less suppression of PAX6 (607108) than wildtype, and almost completely lacked binding activity. In a second screening of 192 Japanese patients with type 2 diabetes, 12 heterozygotes but no homozygotes were identified (mutant allele frequency, 3.1%).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 15, 2024