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NM_144563.3(RPIA):c.762del (p.Asn255fs) AND Deficiency of ribose-5-phosphate isomerase

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 1, 2010
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000013881.29

Allele description [Variation Report for NM_144563.3(RPIA):c.762del (p.Asn255fs)]

NM_144563.3(RPIA):c.762del (p.Asn255fs)

Gene:
RPIA:ribose 5-phosphate isomerase A [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
2p11.2
Genomic location:
Preferred name:
NM_144563.3(RPIA):c.762del (p.Asn255fs)
HGVS:
  • NC_000002.12:g.88738000del
  • NG_016710.1:g.51342del
  • NM_144563.3:c.762delMANE SELECT
  • NP_653164.2:p.Asn255fs
  • NC_000002.11:g.89037517del
  • NM_144563.2:c.762del
Note:
NCBI staff reviewed the sequence information reported in PubMed 14988808 Fig. 6A to determine the location of this allele on the current reference sequence.
Protein change:
N255fs
Links:
OMIM: 180430.0001; dbSNP: rs730880316
NCBI 1000 Genomes Browser:
rs730880316
Molecular consequence:
  • NM_144563.3:c.762del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Deficiency of ribose-5-phosphate isomerase
Synonyms:
Ribose-5-P isomerase deficiency
Identifiers:
MONDO: MONDO:0012073; MedGen: C1291609; Orphanet: 440706; OMIM: 608611

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000034128OMIM
no assertion criteria provided
Pathogenic
(Sep 1, 2010)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

The difference between rare and exceptionally rare: molecular characterization of ribose 5-phosphate isomerase deficiency.

Wamelink MM, GrĂ¼ning NM, Jansen EE, Bluemlein K, Lehrach H, Jakobs C, Ralser M.

J Mol Med (Berl). 2010 Sep;88(9):931-9. doi: 10.1007/s00109-010-0634-1. Epub 2010 May 25.

PubMed [citation]
PMID:
20499043

Leukoencephalopathy associated with a disturbance in the metabolism of polyols.

van der Knaap MS, Wevers RA, Struys EA, Verhoeven NM, Pouwels PJ, Engelke UF, Feikema W, Valk J, Jakobs C.

Ann Neurol. 1999 Dec;46(6):925-8.

PubMed [citation]
PMID:
10589548
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000034128.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

In a patient with ribose 5-phosphate isomerase deficiency (RPIAD; 608611) who presented with leukoencephalopathy and peripheral neuropathy (van der Knaap et al., 1999), Huck et al. (2004) identified compound heterozygosity for 2 mutations in the RPI gene: one, inherited from the mother, was a 1-bp deletion (540delG), resulting in a frameshift at codon 181 with a premature stop at codon 17 (Asn181fsTer17), a protein truncation of 196 amino acids; the other mutation, presumably inherited from the father, was a 182C-T transition, resulting in an ala61-to-val substitution (A61V; 180430.0002).

Wamelink et al. (2010) studied 2 cell lines, fibroblast and lymphoblast, derived from the patient with RPIA deficiency reported by van der Knaap et al. (1999) and Huck et al. (2004). Western blot and mass spectrometry analysis confirmed reduced RPIA levels in both cell lines, with lymphoblasts retaining about 30% residual levels of the protein and fibroblast levels falling below the level of detection. Similarly, mRNA levels showed a greater decrease in fibroblasts than in lymphoblasts; enzyme activity was not detectable in fibroblasts but was reduced to 28% of controls in lymphoblasts. The truncated version of the protein was not detected, indicating that it either is not expressed or is rapidly degraded. Studies in yeast showed that the A61V missense mutation had 30% residual activity when expressed at low levels but that it could complement RPIA loss when expressed at high levels. Metabolic changes in yeast expressing the mutant allele were similar to those observed in the patient. The findings indicated that reduced RPIA activity and reduced expression of the mutant protein contributed to the phenotype.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 29, 2023