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NM_000540.3(RYR1):c.14693T>C (p.Ile4898Thr) AND Central core myopathy

Germline classification:
Pathogenic (4 submissions)
Last evaluated:
Nov 17, 2025
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000013843.37

Allele description [Variation Report for NM_000540.3(RYR1):c.14693T>C (p.Ile4898Thr)]

NM_000540.3(RYR1):c.14693T>C (p.Ile4898Thr)

Gene:
RYR1:ryanodine receptor 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.2
Genomic location:
Preferred name:
NM_000540.3(RYR1):c.14693T>C (p.Ile4898Thr)
Other names:
NM_000540.3(RYR1):c.14693T>C
HGVS:
  • NC_000019.10:g.38584989T>C
  • NG_008866.1:g.156290T>C
  • NM_000540.3:c.14693T>CMANE SELECT
  • NM_001042723.2:c.14678T>C
  • NP_000531.2:p.Ile4898Thr
  • NP_000531.2:p.Ile4898Thr
  • NP_001036188.1:p.Ile4893Thr
  • LRG_766t1:c.14693T>C
  • LRG_766:g.156290T>C
  • LRG_766p1:p.Ile4898Thr
  • NC_000019.9:g.39075629T>C
  • NM_000540.2:c.14693T>C
  • NM_000540.3:c.14693T>C
  • P21817:p.Ile4898Thr
  • p.(Ile4898Thr)
Protein change:
I4893T; ILE4898THR
Links:
UniProtKB: P21817#VAR_045771; OMIM: 180901.0012; dbSNP: rs118192170
Molecular consequence:
  • NM_000540.3:c.14693T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001042723.2:c.14678T>C - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Central core myopathy (CMYO1A)
Synonyms:
CONGENITAL MYOPATHY 1A, AUTOSOMAL DOMINANT, WITH SUSCEPTIBILITY TO MALIGNANT HYPERTHERMIA; Central core disease; Myopathy, central fibrillar
Identifiers:
MONDO: MONDO:0007294; MedGen: C5830701; Orphanet: 597; OMIM: 117000

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000034090OMIM
no assertion criteria provided
risk factor
(Dec 1, 2001)
germlineliterature only

PubMed (4)
[See all records that cite these PMIDs]

SCV000611595HudsonAlpha Institute for Biotechnology, HudsonAlpha Institute for Biotechnology - CSER-HudsonAlpha
criteria provided, single submitter

(HA_assertions_20161101)
Pathogenic
(Oct 12, 2017)
de novoresearch

Citation Link,

SCV001141081Mendelics
criteria provided, single submitter

(Mendelics Assertion Criteria 2017)
Pathogenic
(Nov 17, 2025)
unknownclinical testing

Citation Link,

SCV001429195Institute of Human Genetics, University of Leipzig Medical Center
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Nov 13, 2018)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing
not providedde novoyes1not providednot provided1not providedresearch
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A mutation in the transmembrane/luminal domain of the ryanodine receptor is associated with abnormal Ca2+ release channel function and severe central core disease.

Lynch PJ, Tong J, Lehane M, Mallet A, Giblin L, Heffron JJ, Vaughan P, Zafra G, MacLennan DH, McCarthy TV.

Proc Natl Acad Sci U S A. 1999 Mar 30;96(7):4164-9.

PubMed [citation]
PMID:
10097181
PMCID:
PMC22438

Identification of four novel mutations in the C-terminal membrane spanning domain of the ryanodine receptor 1: association with central core disease and alteration of calcium homeostasis.

Tilgen N, Zorzato F, Halliger-Keller B, Muntoni F, Sewry C, Palmucci LM, Schneider C, Hauser E, Lehmann-Horn F, Müller CR, Treves S.

Hum Mol Genet. 2001 Dec 1;10(25):2879-87.

PubMed [citation]
PMID:
11741831
See all PubMed Citations (5)

Details of each submission

From OMIM, SCV000034090.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (4)

Description

In a large Mexican kindred in which affected members through 4 generations had autosomal dominant congenital myopathy-1A (CMYO1A; 117000) associated with central cores on muscle biopsy, Lynch et al. (1999) identified a heterozygous c.14693T-C transition in the RYR1 gene, resulting in an ile4898-to-thr (I4898T) mutation in the C-terminal transmembrane region of the RYR1 protein. In 2 family members tested, malignant hyperthermia was also present. Lynch et al. (1999) noted that all previously reported RYR1 mutations had been located either in the cytoplasmic N terminus or in a central cytoplasmic region of the protein. Introduction of the I4898T mutation into a rabbit RYR1 cDNA and expression in HEK293 cells resulted in abolition of response to the agonists halothane and caffeine. Coexpression of normal and mutant RYR1 cDNAs in a 1:1 ratio, however, produced RYR1 channels with normal halothane and caffeine sensitivities, but maximal levels of Ca(2+) release were reduced by 67%. Binding of [3H]ryanodine indicated that the heterozygous channel was activated by Ca(2+) concentrations 4-fold lower than normal. Single-cell analysis of cotransfected cells showed a significantly increased resting cytoplasmic Ca(2+) level and a significantly reduced luminal Ca(2+) level. These data indicated a leaky channel, possibly caused by a reduction in the Ca(2+) concentration required for channel activation. Comparison with 2 other coexpressed mutant/normal channels suggested that the I4898T mutation produces one of the most abnormal RYR1 channels that had been investigated, and this level of abnormality was reflected in the severe and penetrant phenotype of the patients with congenital myopathy in the pedigree.

Tilgen et al. (2001) identified the I4898T mutation, resulting from a c.14693T-C transition, in 3 of 25 unrelated individuals with CMYO1A. The isoleucine residue is highly conserved and is located in the C-terminal hydrophobic membrane-spanning region of the protein.

In 2 members of a family (CCD05) and an unrelated patient (CCD11) with CMYO1A, Monnier et al. (2001) identified a heterozygous I4898T mutation in exon 102 of the RYR1 gene.

Variant Function

Avila et al. (2001) expressed the analogous rabbit mutation (I4897T) in skeletal myotubes derived from Ryr1-knockout mice. They found that homozygous expression of I4897T in myotubes resulted in a complete uncoupling of sarcolemmal excitation from voltage-gated sarcoplasmic reticulum (SR) calcium ion release without significantly altering resting cytosolic calcium ion levels, sarcoplasmic reticulum calcium ion content, or Ryr1-mediated enhancement of dihydropyridine receptor (DHPR) channel activity. Coexpression of both I4897T and wildtype Ryr1 resulted in a 60% reduction in voltage-gated SR calcium ion release, again without altering resting cytosolic calcium ion levels, SR calcium ion content, or DHPR channel activity. These findings indicated that muscle weakness in patients with the I4898T mutation involves a functional uncoupling of sarcolemmal excitation from SR calcium ion release, rather than the expression of overactive or leaky SR calcium ion release channels.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From HudsonAlpha Institute for Biotechnology, HudsonAlpha Institute for Biotechnology - CSER-HudsonAlpha, SCV000611595.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyes1not providednot provided1not providednot providednot provided

From Mendelics, SCV001141081.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The variant NM_000540.3(RYR1):c.14693T>C (p.Ile4898Thr) has only one allele listed by GnomAD v4.1.0 (frequency 6.196e-7). In silico predictors suggest this variant as likely pathogenic (CADD/REVEL/PolyPhen). Previously submitted to ClinVar as pathogenic with robust evidences.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From Institute of Human Genetics, University of Leipzig Medical Center, SCV001429195.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Apr 12, 2026

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