NM_000365.6(TPI1):c.125G>A (p.Cys42Tyr) AND Triosephosphate isomerase deficiency

Clinical significance:Pathogenic (Last evaluated: Jan 1, 1997)

Review status:(0/4) 0 stars out of maximum of 4 stars

no assertion criteria provided

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000013289.26

Allele description [Variation Report for NM_000365.6(TPI1):c.125G>A (p.Cys42Tyr)]

NM_000365.6(TPI1):c.125G>A (p.Cys42Tyr)

Gene:
TPI1:triosephosphate isomerase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12p13.31
Genomic location:
Preferred name:
NM_000365.6(TPI1):c.125G>A (p.Cys42Tyr)
Other names:
C41Y
HGVS:
  • NC_000012.12:g.6868873G>A
  • NG_011948.1:g.6454G>A
  • NM_000365.6:c.125G>AMANE SELECT
  • NM_001159287.1:c.236G>A
  • NM_001258026.2:c.-122G>A
  • NP_000356.1:p.Cys42Tyr
  • NP_001152759.1:p.Cys79Tyr
  • LRG_1126t1:c.125G>A
  • LRG_1126:g.6454G>A
  • LRG_1126p1:p.Cys42Tyr
  • NC_000012.11:g.6978037G>A
  • P60174:p.Cys79Tyr
Protein change:
C42Y; CYS41TYR
Links:
UniProtKB: P60174#VAR_007534; OMIM: 190450.0004; dbSNP: rs121964848
NCBI 1000 Genomes Browser:
rs121964848
Molecular consequence:
  • NM_001258026.2:c.-122G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_000365.6:c.125G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001159287.1:c.236G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Triosephosphate isomerase deficiency (TPID)
Identifiers:
MONDO: MONDO:0014221; MedGen: C1860808; Orphanet: 868; OMIM: 615512

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000033536OMIMno assertion criteria providedPathogenic
(Jan 1, 1997)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Evidence for founder effect of the Glu104Asp substitution and identification of new mutations in triosephosphate isomerase deficiency.

Arya R, Lalloz MR, Bellingham AJ, Layton DM.

Hum Mutat. 1997;10(4):290-4.

PubMed [citation]
PMID:
9338582

Details of each submission

From OMIM, SCV000033536.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In 2 families with triosephosphate isomerase deficiency (TPID; 615512), Arya et al. (1997) found compound heterozygosity for the common glu104-to-asp mutation (E104D; 190450.0001) and a previously unknown missense mutation, cys41-to-tyr (C41Y), due to a TGT-to-TAT transition.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 24, 2021

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