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NM_002010.3(FGF9):c.296G>A (p.Ser99Asn) AND Multiple synostoses syndrome 3

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jul 1, 2009
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000009242.4

Allele description [Variation Report for NM_002010.3(FGF9):c.296G>A (p.Ser99Asn)]

NM_002010.3(FGF9):c.296G>A (p.Ser99Asn)

Gene:
FGF9:fibroblast growth factor 9 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q12.11
Genomic location:
Preferred name:
NM_002010.3(FGF9):c.296G>A (p.Ser99Asn)
HGVS:
  • NC_000013.11:g.21681060G>A
  • NG_016272.1:g.14985G>A
  • NM_002010.3:c.296G>AMANE SELECT
  • NP_002001.1:p.Ser99Asn
  • NC_000013.10:g.22255199G>A
  • P31371:p.Ser99Asn
Protein change:
S99N; SER99ASN
Links:
UniProtKB: P31371#VAR_063254; OMIM: 600921.0001; dbSNP: rs121918322
NCBI 1000 Genomes Browser:
rs121918322
Molecular consequence:
  • NM_002010.3:c.296G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Multiple synostoses syndrome 3 (SYNS3)
Identifiers:
MONDO: MONDO:0013064; MedGen: C2751826; Orphanet: 3237; OMIM: 612961

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000029460OMIM
no assertion criteria provided
Pathogenic
(Jul 1, 2009)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Multiple synostoses syndrome is due to a missense mutation in exon 2 of FGF9 gene.

Wu XL, Gu MM, Huang L, Liu XS, Zhang HX, Ding XY, Xu JQ, Cui B, Wang L, Lu SY, Chen XY, Zhang HG, Huang W, Yuan WT, Yang JM, Gu Q, Fei J, Chen Z, Yuan ZM, Wang ZG.

Am J Hum Genet. 2009 Jul;85(1):53-63. doi: 10.1016/j.ajhg.2009.06.007.

PubMed [citation]
PMID:
19589401
PMCID:
PMC2706969

Details of each submission

From OMIM, SCV000029460.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In 12 affected members of a 5-generation Chinese family with autosomal dominant multiple synostoses syndrome (SYNS3; 612961), Wu et al. (2009) identified heterozygosity for a 296G-A transition in exon 2 of the FGF9 gene, resulting in a ser99-to-asn (S99N) substitution predicted to alter binding to FGFR3 (134934). The mutation was not found in unaffected family members or in 250 unrelated ethnically matched controls. In vitro studies demonstrated that mutant FGF9 was expressed and secreted as efficiently as wildtype in transfected cells; however, it induced compromised chondrocyte proliferation and differentiation, accompanied by enhanced osteogenic differentiation and matrix mineralization of bone marrow-derived mesenchymal stem cells. Biochemical analysis revealed that the S99N mutation caused significantly impaired FGF signaling, as evidenced by diminished activity of the ERK1/2 pathway (see 176948) and decreased beta-catenin (116806) and c-MYC (190080) expression when compared with wildtype FGF9. Binding of mutant protein to the receptor FGFR3 was severely impaired, although homodimerization of mutant FGF9 to itself or wildtype was not detectably affected, providing a basis for the observed defective FGF9 signaling.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022