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NM_001127222.2(CACNA1A):c.1994C>T (p.Thr665Met) AND Migraine, familial hemiplegic, 1

Germline classification:
Pathogenic (5 submissions)
Last evaluated:
Oct 28, 2021
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000009009.25

Allele description [Variation Report for NM_001127222.2(CACNA1A):c.1994C>T (p.Thr665Met)]

NM_001127222.2(CACNA1A):c.1994C>T (p.Thr665Met)

Gene:
CACNA1A:calcium voltage-gated channel subunit alpha1 A [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.13
Genomic location:
Preferred name:
NM_001127222.2(CACNA1A):c.1994C>T (p.Thr665Met)
HGVS:
  • NC_000019.10:g.13303877G>A
  • NG_011569.1:g.207584C>T
  • NM_000068.4:c.1997C>T
  • NM_001127221.2:c.1997C>T
  • NM_001127222.2:c.1994C>TMANE SELECT
  • NM_001174080.2:c.1997C>T
  • NM_023035.3:c.1997C>T
  • NP_000059.3:p.Thr666Met
  • NP_001120693.1:p.Thr666Met
  • NP_001120693.1:p.Thr666Met
  • NP_001120694.1:p.Thr665Met
  • NP_001167551.1:p.Thr666Met
  • NP_075461.2:p.Thr666Met
  • LRG_7t1:c.1997C>T
  • LRG_7:g.207584C>T
  • LRG_7p1:p.Thr666Met
  • NC_000019.9:g.13414691G>A
  • NM_000068.2:c.1997C>T
  • NM_000068.3:c.1997C>T
  • NM_001127221.1:c.1997C>T
  • NM_001127222.2:c.1994C>T
  • NM_023035.2:c.1997C>T
  • p.(Thr666Met)
Protein change:
T665M; THR666MET
Links:
UniProtKB/Swiss-Prot: VAR_001492; OMIM: 601011.0002; dbSNP: rs121908212
NCBI 1000 Genomes Browser:
rs121908212
Molecular consequence:
  • NM_000068.4:c.1997C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127221.2:c.1997C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127222.2:c.1994C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001174080.2:c.1997C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_023035.3:c.1997C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
2

Condition(s)

Name:
Migraine, familial hemiplegic, 1
Synonyms:
Migraine, familial hemiplegic 1, with progressive cerebellar ataxia
Identifiers:
MONDO: MONDO:0020756; MedGen: C1832884; Orphanet: 569; OMIM: 141500

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000029223OMIM
no assertion criteria provided
Pathogenic
(Jun 24, 2005)
germlineliterature only

PubMed (6)
[See all records that cite these PMIDs]

SCV000090843UniProtKB/Swiss-Prot
no classification provided
not providednot providednot provided

PubMed (3)
[See all records that cite these PMIDs]

SCV000598107Center of Genomic medicine, Geneva, University Hospital of Geneva
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Aug 30, 2016)
de novoclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001150034Institute of Human Genetics Munich, Klinikum Rechts Der Isar, TU München
criteria provided, single submitter

(Classification criteria August 2017)
Pathogenic
(May 5, 2021)
maternal, germlineclinical testing

Citation Link,

SCV001994820Equipe Genetique des Anomalies du Developpement, Université de Bourgogne
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Oct 28, 2021)
de novoclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providednot providednot providednot providednot providednot provided1not providedliterature only
not providedde novoyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineyes1not providednot providednot providednot providedclinical testing
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedmaternalyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Familial hemiplegic migraine and episodic ataxia type-2 are caused by mutations in the Ca2+ channel gene CACNL1A4.

Ophoff RA, Terwindt GM, Vergouwe MN, van Eijk R, Oefner PJ, Hoffman SM, Lamerdin JE, Mohrenweiser HW, Bulman DE, Ferrari M, Haan J, Lindhout D, van Ommen GJ, Hofker MH, Ferrari MD, Frants RR.

Cell. 1996 Nov 1;87(3):543-52.

PubMed [citation]
PMID:
8898206

Detection of a novel missense mutation and second recurrent mutation in the CACNA1A gene in individuals with EA-2 and FHM.

Friend KL, Crimmins D, Phan TG, Sue CM, Colley A, Fung VS, Morris JG, Sutherland GR, Richards RI.

Hum Genet. 1999 Sep;105(3):261-5.

PubMed [citation]
PMID:
10987655
See all PubMed Citations (10)

Details of each submission

From OMIM, SCV000029223.8

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (6)

Description

In families with hemiplegic migraine (FHM1; 141500), Ophoff et al. (1996) discovered a C-to-T transition in nucleotide 2272 of CACNL1A4, resulting in a thr666-to-met (T666M) amino acid substitution.

Friend et al. (1999) found this recurrent mutation in exon 16 in an Australian patient with familial hemiplegic migraine.

Ducros et al. (1999) screened 16 families and 3 nonfamilial cases with hemiplegic migraine associated with progressive cerebellar ataxia (see 141500). They found the T666M mutation in 9 families and 1 nonfamilial case. The T666M mutation was absent in 12 probands belonging to pure HPM families whose disease appeared to be linked to CACNA1A.

Terwindt et al. (2002) studied 27 patients with sporadic hemiplegic migraine and found the T666M mutation in a 78-year-old woman who had characteristic attacks starting at age 14 as well as interictal nystagmus, dysarthria, limb and gait ataxia, and cerebellar atrophy.

Kors et al. (2003) reported the clinical symptoms of 5 families with hemiplegic migraine and the T666M mutation. Three of the families displayed cerebellar ataxia, 3 had loss of consciousness or coma associated with episodes, 1 had attacks with confusion but without hemiparesis, and 1 had progressive cognitive dysfunction. The authors emphasized the inter- and intrafamilial clinical heterogeneity.

Barrett et al. (2005) found that CACNA1A channels with the T666M mutation were expressed and trafficked normally to the cell surface in transfected HEK293 cells. However, T666M mutant channels exhibited defective voltage-dependent gating to support calcium influx.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From UniProtKB/Swiss-Prot, SCV000090843.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot provided PubMed (3)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1not providednot provided1not providednot providednot providednot providednot providednot provided

From Center of Genomic medicine, Geneva, University Hospital of Geneva, SCV000598107.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot providednot providednot providednot providednot providednot provided

From Institute of Human Genetics Munich, Klinikum Rechts Der Isar, TU München, SCV001150034.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
2not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1maternalyesnot providednot providednot provided1not providednot providednot provided
2germlineyesnot providednot providednot provided1not providednot providednot provided

From Equipe Genetique des Anomalies du Developpement, Université de Bourgogne, SCV001994820.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024