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NM_032273.4(TMEM126A):c.163C>T (p.Arg55Ter) AND Autosomal recessive optic atrophy, OPA7 type

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Mar 14, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000000438.5

Allele description [Variation Report for NM_032273.4(TMEM126A):c.163C>T (p.Arg55Ter)]

NM_032273.4(TMEM126A):c.163C>T (p.Arg55Ter)

Gene:
TMEM126A:transmembrane protein 126A [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q14.1
Genomic location:
Preferred name:
NM_032273.4(TMEM126A):c.163C>T (p.Arg55Ter)
HGVS:
  • NC_000011.10:g.85654139C>T
  • NG_017157.2:g.11221C>T
  • NM_001244735.2:c.-48C>T
  • NM_032273.3:c.163C>T
  • NM_032273.4:c.163C>TMANE SELECT
  • NP_115649.1:p.Arg55Ter
  • NC_000011.9:g.85365183C>T
  • NM_032273.4:c.163C>T
Protein change:
R55*; ARG55TER
Links:
OMIM: 612988.0001; dbSNP: rs121434508
NCBI 1000 Genomes Browser:
rs121434508
Molecular consequence:
  • NM_001244735.2:c.-48C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_032273.4:c.163C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Autosomal recessive optic atrophy, OPA7 type
Synonyms:
Optic atrophy 7; OPTIC ATROPHY 7 WITH OR WITHOUT AUDITORY NEUROPATHY
Identifiers:
MONDO: MONDO:0013069; MedGen: C2751812; Orphanet: 227976; Orphanet: 98676; OMIM: 612989

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000020587OMIM
no assertion criteria provided
Pathogenic
(Jan 1, 2012)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

SCV004238381Revvity Omics, Revvity
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Mar 14, 2023)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

TMEM126A, encoding a mitochondrial protein, is mutated in autosomal-recessive nonsyndromic optic atrophy.

Hanein S, Perrault I, Roche O, Gerber S, Khadom N, Rio M, Boddaert N, Jean-Pierre M, Brahimi N, Serre V, Chretien D, Delphin N, Fares-Taie L, Lachheb S, Rotig A, Meire F, Munnich A, Dufier JL, Kaplan J, Rozet JM.

Am J Hum Genet. 2009 Apr;84(4):493-8. doi: 10.1016/j.ajhg.2009.03.003. Epub 2009 Mar 26.

PubMed [citation]
PMID:
19327736
PMCID:
PMC2667974

Nonsense mutation in TMEM126A causing autosomal recessive optic atrophy and auditory neuropathy.

Meyer E, Michaelides M, Tee LJ, Robson AG, Rahman F, Pasha S, Luxon LM, Moore AT, Maher ER.

Mol Vis. 2010 Apr 13;16:650-64.

PubMed [citation]
PMID:
20405026
PMCID:
PMC2855733
See all PubMed Citations (4)

Details of each submission

From OMIM, SCV000020587.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

In a multiplex consanguineous Algerian family with autosomal recessive optic atrophy (OPA7; 612989), Hanein et al. (2009) identified a c.163C-T transition in the TMEM126A gene, resulting in an arg55-to-ter (R55X) substitution. The mutation occurred in a CpG doublet, segregated with the disease in the family, and was not found in 700 control chromosomes (600 European and 100 Algerian). The same mutation was found in homozygosity in 3 additional autosomal recessive OPA families of Maghrebian origin, 1 from Tunisia and 2 from Morocco. Haplotype analysis was consistent with a founder effect, and suggested that the R55X mutation originated approximately 2,400 years ago.

In 2 affected sibs from a consanguineous family of Algerian origin with optic atrophy and mild sensorineural hearing loss due to auditory neuropathy, Meyer et al. (2010) identified homozygosity for the R55X mutation in the TMEM126A gene. The unaffected parents were heterozygous for the mutation.

In 3 affected sibs from a consanguineous Moroccan family with optic atrophy, Desir et al. (2012) identified homozygosity for the R55X mutation in the TMEM126A gene. The unaffected parents were heterozygous for R55X, as was a brother who experienced transient partial vision loss with exercise (Uhthoff phenomenon) but had normal visual acuity at rest, with no disc pallor on funduscopy. The mutation was not found in 100 ethnically matched controls. The proband also exhibited sensorimotor axonal neuropathy with electrophysiologic data suggestive of focal demyelinating abnormalities.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Revvity Omics, Revvity, SCV004238381.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 19, 2024