Conserved Protein Domain Family
RnjA

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COG0595: RnjA (this model, PSSM-Id:223668 is obsolete and has been replaced by 440360)
mRNA degradation ribonuclease J1/J2 [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 223668
Aligned: 54 rows
Threshold Bit Score: 173.99
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
18266923 147 PPKAPA-----NGLRIYALGGISEIG-RNMTVFEYNN----RLLIVDCGVLFP------SS------GEPGVDLI----L 200 Corynebacterium glu...
1351578    1 ----------mAKIKFFALGGQDERG-KNCYVLEIDN----DVFIFNVGSLTP------TT------AVLGVKKI----I 49  Mycoplasma genitalium
20094694   1 -------------------MGIQRLA-HNSPYSHHRG----VKCSGDGGVLLR------PAds---wAGVLVDTGs---T 44  Methanopyrus kandle...
20094710   1 --------------------------------MLLRP------LDPWCGVVVDyg-----------dTRVFVDVT----- 26  Methanopyrus kandle...
2496428    1 ----------mAKINFFAFGGQDERG-KNCFVLEINN----DVFIFNVGSLTP------TT------AVLGVKKI----I 49  Mycoplasma pneumoniae
15678932  18 SPGTPHiltpgDYMDFRFYGGVDEIG-GNRIEVSCNG----DGIFLDFGKRFNienlyfDEflqprsFSGIADLIeleaL 92  Methanothermobacter...
15829176   1 ----------mPKLQFFALGGQDENG-KNCFVIEYSD----DIFIFNIGAKVP------IN------STYGVDTV----I 49  Mycoplasma pulmonis
14521766  11 TIGGTKihiedGNNGIFLDFGMNFAKySMYYEEFLRErtkrGIYDLWMLNLIPrl---nIYr----sDLIPNDLA----- 78  Pyrococcus abyssi
14590378  12 TIGGTKihieeNENGLFLDFGMNFARySLYYEEYLGErtsrGIYDLWKLNLIPkl---nIYr----rDLIPKDLA----- 79  Pyrococcus horikoshii
13358072   1 ----------mAKINFLSLGGQDERG-KSCFVLEVND----DIFIFNAGAKIP------TS------DVFGVNMI----V 49  Ureaplasma urealyticum
18266923 201 PDFGPIEDHLH------------RVDALVVTHGHEDHIG------------------------------------AIPWL 232 Corynebacterium glu...
1351578   50 PDFSWIQENQA------------RVKGIFIGNAITENLG------------------------------------SLEFL 81  Mycoplasma genitalium
20094694  45 IVAVDAGPNPWha---------eDTDYLLLTHAHLDHVA------------------------------------SLDRY 79  Methanopyrus kandle...
20094710  27 -DR--KGPY-Vk-----------RADAVIVTHPHRDHYGg------------------------------------VPRT 55  Methanopyrus kandle...
2496428   50 PDFSWIQENQA------------RIKGIFIGNPVTENIG------------------------------------SLEFL 81  Mycoplasma pneumoniae
15678932  93 PWIPGLYREDQvrylgmrfedepAVSGILLSHPHLDHAGclky-----------------------------irhDIPFY 143 Methanothermobacter...
15829176  50 PSFSYLKKNAK------------KIRGIFITDTKNSSFS------------------------------------ALPWI 81  Mycoplasma pulmonis
14521766  79 -QE--VSRYPRi-----------PVNAVLISHAHLDHVGnvalldekipivaspttl-vilkalrdtsrgnnlgmETPYY 143 Pyrococcus abyssi
14590378  80 -QE--VGQYPRp-----------QVNAVLISHAHLDHVGnitlldenisivgspmtitilkaindtstggnhfgvELPYY 145 Pyrococcus horikoshii
13358072  50 CDYSYLEKNAK------------RVKGIFIGTPTFNNVM------------------------------------GIKLL 81  Ureaplasma urealyticum
18266923 233 LKLRND--------IPIL--ASRFTLALIAAKCK-----EHRQRP---KLIEVNEQSN--EDR-------------GPFN 279 Corynebacterium glu...
1351578   82 FHTVGf--------FPIY--TSSIGASIIKSKINe---nKLNIARdklEIHELKPLET--IEI-------------SNHS 133 Mycoplasma genitalium
20094694  80 SRNG----------------AKVLCPGDVRDDLG--------LVDsavGVKKVKSMLY-------------------DVI 116 Methanopyrus kandle...
20094710  56 EFGELR--------------ADEVTAALLGME--------D-EAEplrSSFEAGL-----------------------LD 89  Methanopyrus kandle...
2496428   82 FHTVGf--------FPIY--TSTIGAVVIKTKIHe---nKLNIPHdelEIHELKPLET--VKI-------------GHHN 133 Mycoplasma pneumoniae
15678932 144 MTEESfl------iLKAIedTSTLSSDLLHYKPKfhfkeKKRKTGntsHMRDKNIKIErpIKLlepyk----aedlGEFE 213 Methanothermobacter...
15829176  82 LMQIPG--------LKIY--TSPFSKVNVLDRVS-----KYKIGHndyEIITISKDISf-----------------GDIT 129 Mycoplasma pulmonis
14521766 144 TPRKRTegnpplveANTG--KYYPTRDLILTDKFs---eEVRRFMrwrAEVELANKNN--IKRiklgkvqnleesyLGFE 216 Pyrococcus abyssi
14590378 146 KVRKIKdpegyiieADRK--ADYPSRKVVLTEHVq----SLHEFLfyrPGQESPK-----AKKiipnevktleeedLGFE 214 Pyrococcus horikoshii
13358072  82 LGQVGy-------kIPIY--TSPIGAIVIKKIFEq----KVNNKKiepNIIELDPISD--KKI-------------GSIY 133 Ureaplasma urealyticum
18266923 280 IRFWAVNHSIPDCLGLAIKTPAGLVIHTGDIKLDQTPPDGR--PTDLPALSRFGDEGVDLMLCDSTNAT--TPGVSGSEA 355 Corynebacterium glu...
1351578  134 ITPFKVSSSLPSSFGFALNTDNGYIVFIDDFIVLNDKNIAF--ENQLNQIIPKLSDNTLLLITGVGLVGr-NSGFTTPKH 210 Mycoplasma genitalium
20094694 117 VHPIPVEHTCS-AYAYVLDLEECNVLVTGDWHVGPRTIDGEikPLWKAVREVVGGEGVDVIVSEATRALvdAPELGGNER 195 Methanopyrus kandle...
20094710  90 VRTYPVNHMCPKAHAVLLSGDAR-VLITGDWCALG---E-----HPP-LWELVDDE-VDAIVTECTRAAsvHPDDPEAAE 158 Methanopyrus kandle...
2496428  134 ITPFKVSSSIPSSFGFALHTDDGYIVYVDDFIVLNDKNIAF--ENQLNQIIPQVANKTLLLITGVGLVGr-NTGFTTPKH 210 Mycoplasma pneumoniae
15678932 214 ITQAPVDHSVPGSCAYLIESEEA-IVYTGDIRFRGRRDQES---RKFVKKARKFSP--TVMITEGTRID---QDNSTFEE 284 Methanothermobacter...
15829176 130 IKPIQVFGSVPGTLGFDVQSPMGSVVFLLNFILGENGFFGK---TDLLAIKKQVNNNLLALVMDSGKSK--NPGFAKDKI 204 Mycoplasma pulmonis
14521766 217 VRAYPVDHSIYGATAYIIEGDVS-VAYTGDFRLHGKNGN-----LTR-KFIKAAKN-ASILITEGTRVSrkNDDFNVSEK 288 Pyrococcus abyssi
14590378 215 VKAFNVDHSIYGATAYIIEGDVS-LAYTGDFRLHGRKGD-----ETR-KFIKAAKS-SSILITEGTRVGr-DEHGNVSEQ 285 Pyrococcus horikoshii
13358072 134 VTSFKVSNSMPHSYGFVLKTSDGAIVYVDEFIISNDKNKTF--DSQINLLNNITKNNTLALIVGMGQAG--NPYFTAPNH 209 Ureaplasma urealyticum
18266923 356 DVAPTLKRLVGDA--KQRVILASFASNVYRVQAAVDAAVASNRKVAFNGRSMIRNMEIAEKLGYLKAPRG-TIISMDD-- 430 Corynebacterium glu...
1351578  211 KSLEQLNRIITPA--KGRIFVACYDSNAYSVMTLAQIARMQNRPFIIYSQSFVHLFNTIVRQKLFNNTHL-NTISIEE-- 285 Mycoplasma genitalium
20094694 196 VFEYALSLHDPRD-----VLAFLQPTDLEIIDTAFRVASDLGLDVVVDSETDRKLKFLERRGDVEWEYD----------- 259 Methanopyrus kandle...
20094710 159 YRIQRLLELHRED--R--TVLLLTHVN----------------PLIDVASEVEILHVLEGDP--VDEAVKaGAHEG---- 212 Methanopyrus kandle...
2496428  211 KSLEQLNRIIASA--KGRVFAACYDSNAYSVMTLAQIARMQNRPFVIYSHSFVHLFNAIVRQKLFNNTHL-NTISIEE-- 285 Mycoplasma pneumoniae
15678932 285 DIERRTSDIAVNH--RGLVIINYPIRDLDRFLTFYRAAENSDRTLAVSLKQAYIIKLFEGLGYPWLRDLA-VYIPRRN-- 359 Methanothermobacter...
15829176 205 HLPKSVEQVFENAkdNERIIVGAYDEEIGSLNYILDLAKKYNRPIITYGKSYGKQIFLIKKINPKFKTS--EFLNYKK-- 280 Mycoplasma pulmonis
14521766 289 EVYENALRIVEEA--KGLVIADFSLRNFERLESFKRIAEKTGRELVITTKEAYYLHALKTAG-EADHLREvKIYEDSKtk 365 Pyrococcus abyssi
14590378 286 EVYENALKIVEEA--KGLVIADFSPRNFERLEIFKKIAENTGRELVITAKDAYFLHALQLVD-NVNRLKDlRIYGNLKat 362 Pyrococcus horikoshii
13358072 210 KNKAFYEAALQNT--KNRLIVGCYSNDAYSIFTLATIAKQQNRPFIVYSNNFINTFIGVLKLKLFNSK---NLISLP--- 281 Ureaplasma urealyticum
18266923 431 -----------------ASRMAPH---KVMLITTGTQGEPMAALSRMARREHRQ-I--TVRDGDLIILSSSLVPGNEEAV 487 Corynebacterium glu...
1351578  286 -----------------INNSTNS-----IVVLTSPPDKLYAKLFKIGMNEDER-I--RYRKSDTFIFMTPKVAGYEEIE 340 Mycoplasma genitalium
20094694 260 --------------------------------VADEPLVRSLYLTVSWEKAR---------ELAEAGLVEAVVGN--WAT 296 Methanopyrus kandle...
20094710 213 -------------------------------ADLEVVSRPEYPLVTSSVGTVEG------LSKRPHVLITER-----WFL 250 Methanopyrus kandle...
2496428  286 -----------------INNSTNA-----IVVLTAPPDKLYAKLFKIGTNEDER-V--RYRKTDSFIFMIPRIAGYEELE 340 Mycoplasma pneumoniae
15678932 360 -----------------WGLIAED-----AFVCFDGEWIPAADLPEEYMEQDYRgWerAFLELDNTITCRDLREE-PEEY 416 Methanothermobacter...
15829176 281 -----------------ANFVPN-----ALILVTGTVERLYQRFLRIAKNEDVYlN---LKSSDNVIFIAPPVNGIEVIA 335 Mycoplasma pulmonis
14521766 366 pekwekw-ilskynelkVTPEEITreqENYILCFSFYDMPKLLDIMPSGGVYIYsS--SEAFTEEQVFSFLRLWN--WLQ 440 Pyrococcus abyssi
14590378 363 qdkwesivvwgnyaeqyISPFEIRknqENYILCFSFYDMPHLLDIMPDGGTYIYsS--SEAFGEEQVFSFLRLWN--WLQ 438 Pyrococcus horikoshii
13358072 282 -----------------VSEINNSk--NAIIVVIENQDTLFSKLNKILHNEDKY-V--NLSSDDQLILGVVITPGFEMLA 339 Ureaplasma urealyticum
18266923 488 FGVINML-AQIGATVVTGRD-AKVHTSGHGYSGELLFLYNAARPKNAMPVHGEWRHLRANKELAISTGVNRD---NVVLA 562 Corynebacterium glu...
1351578  341 AQILDDI-ARNEVSYYNLGR---EILSIQASDEDMKFLVSSLKPKYIIPTGGLYRDFINFTMVLKQAGAEQN---QILIL 413 Mycoplasma genitalium
20094694 297 VHHLRRR---VGVKYAYVIP-----RSGHASRPEITRLITELEPSCLVFRHRSGDATRLERYYSRFVDEVR-----VWVG 363 Methanopyrus kandle...
20094710 251 YRDREG--RLRRLLDAVP-YpYIVSGTGHASAAELVRLVEELEPEYLVLRHGS-PDGVRALRKRLAGAGLDVrveAWIGR 326 Methanopyrus kandle...
2496428  341 AQILDDV-ARNEVSYYNLGR---EILSINASDEDMKFLVTSLKPKYIIPTSGLYRDFINFTMVMKQAGVEQS---QVLIP 413 Mycoplasma pneumoniae
15678932 417 LFQCDYFeFKEFIDIKPEG---AAYIKSKTEPFNEEMEIDAERESNWLRHFGIYQYRRFHSSGHAGRSDLLG---MIRDI 490 Methanothermobacter...
15829176 336 AHTLDQV-TKVSPKILDVT--EEEYYRHRPASKDIYQTIDVLRPKYYIPVQGLYRYLVDAAALVRPLGYNTK---NTLVL 409 Mycoplasma pulmonis
14521766 441 YFGFEVH-GFKVDEHGRPIFeKGFHASGHISKDELVKVIEEVDPDYIVPVHTENPEWFREV---WEDK--------AIIL 508 Pyrococcus abyssi
14590378 439 YFGFEVH-GFRVDKYGKPIFeKGFHASGHISREELRKVIDEIDPDYVIPVHTEKPELFKWA---FGER--------VILL 506 Pyrococcus horikoshii
13358072 340 AELSDEV-GRLDIPYKALP---KTVLPMTQSDEDLKHLINFLQPKFLIPINGLYKTEVKFSSTVTTSWIKSD---QIISV 412 Ureaplasma urealyticum
18266923 563 QNGVVVDMVNGRAQVVG--QIPVGNLYVDGVTMGDIDADILADRTSLGEGGLISITAVIDNRTGRLLERPTVQTSGFSE- 639 Corynebacterium glu...
1351578  414 FNGEVLTIENKKLDSKKn-ELKLNPKCVDSAGLQEIGASIMFERDQMSESGVVIIIIYFDQKKSEFLNEITYSFLGVSLd 492 Mycoplasma genitalium
20094694 364 RGCRDESLELPP-------------------------------------------------------------------- 375 Methanopyrus kandle...
20094710 327 RGGKLELP------------------------------------------------------------------------ 334 Methanopyrus kandle...
2496428  414 FNGEVLAINHKQIDNKKr-ELKLNPKCVDSAGLQEIGASIMFERDQMSEAGVVTIIIYYDSKKSEFLNEITYSFLGVSLd 492 Mycoplasma pneumoniae
15678932 491 EPESIYPIHTRNREEFLi-FEDESIRVLDPPQ------------------------------------------------ 521 Methanothermobacter...
15829176 410 QNGKIAEFDGGKLISHNkkIKQVGDDIIDGFGLGDVSHEVIREREKMASNGVVLISACIN-KFKQIKGKIEIKYLGLVSi 488 Mycoplasma pulmonis
14521766 509 RNGDSWEI------------------------------------------------------------------------ 516 Pyrococcus abyssi
14590378 507 KNGESWEI------------------------------------------------------------------------ 514 Pyrococcus horikoshii
13358072 413 SNGELFTIEDKVLNPKPq-IIELEDKYISSFDALDVGANILFERSQMGENGVINLIVIFDKQFQKLFNYVEFDYCGVVNn 491 Ureaplasma urealyticum
18266923 640 DAK-----SMMGEVTeLSETTMNDLAAEGe----NDPYRMVQQLRRKLSRFVEQKWKRQPVIMPTVI 697 Corynebacterium glutamicum
1351578  493 VPEkdklkTKMEELIkKQINDIKDFTTIKkrigkEISKELKVSIKRAVMNLFTKMTSKAPLILSTII 559 Mycoplasma genitalium
20094694     -------------------------------------------------------------------     Methanopyrus kandleri AV19
20094710     -------------------------------------------------------------------     Methanopyrus kandleri AV19
2496428  493 SNNqvklkTKMEELIrKQINDIKDFTTIKrrlgkDTSKELKVSIKRAVMNLFTKMTAKAPLILSTII 559 Mycoplasma pneumoniae
15678932     -------------------------------------------------------------------     Methanothermobacter thermautotro...
15829176 489 ADRd----EINDFVRsIVVNNFYDEENSS-------LKVIQEKIRKQVRKKLYKKIEKEPIVVVVFY 544 Mycoplasma pulmonis
14521766     -------------------------------------------------------------------     Pyrococcus abyssi
14590378     -------------------------------------------------------------------     Pyrococcus horikoshii
13358072 492 DAQi---kEIEETFKkRMGECLVYDERKR-----LILKDTKANLKRLLTKLFEKKFNKRPLVLPTVV 550 Ureaplasma urealyticum
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