2FPO,2IFT,2FHP,3P9N


Conserved Protein Domain Family
RsmD

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COG0742: RsmD 
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]
16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification
Statistics
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PSSM-Id: 440505
Aligned: 910 rows
Threshold Bit Score: 100.926
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2FPO_A        14 IRIIGGQWRGRKLPVPD--SPGLRPTTDRVRETLFNWLAP------VI-VDAQCLDCFAGSGALGLEALSRYAAGATLIE 84 
WP_013682032   1 MRIIAGKLKYKRLYFKK--NQNLRPTRNIVKKSFFDTMRG------LI-EGCVFLDLFAGSGSVGMEALSRGAKRVVFVD 71 
NP_224801      1 MRILAGKYKGKSLKTFS--NPHIRPTSGLVKEAFFSICRE------DI-EGAAFLDLFAGMGAIGFEALSRGAASVVFVD 71 
WP_013181236   2 LQIIGGKLKRKKLKSPK--GLNTRPTSSRLRETVFDICQQ------EI-ERARFLDLFSGSGSMGIEALSRGAGSAVFVD 72 
WP_013942458   1 MRIAGGKFKNHKLIAPK--GNTTRPTLEKLRQTVFNICQH------TI-EDATFLDVFAGSGAMGLEALSRGASHATFLE 71 
WP_102242512   3 LKILGGFARGQVLAVPK--GDLIRPTSVMLRRRIYDFYq-------DM-DGVTFVDLCAGSGAMGFEAWSRGAFRIYLNE 72 
WP_006340482   1 MRIISGLYKNRTIVAPK--GDKTRPTSSQLRAALFNICQL------YI-EDAVFLDLFAGSGAIGLEALSRGAKKVVFVD 71 
WP_014245208   3 IKILGGLVKGQALLVPK--GDLIRPTSVMLRRKIFDARq-------DL-SGFHFVDLCAGSGAMGLEALSRGASSLKLIE 72 
NP_220001      1 MKILSGKFKGKSLKTFS--NPSVRPTCGVVKEAVFNICAN------HI-VGARFLDLFAGSGSMGFEAISRGAESATFVD 71 
NP_711002      4 LKVQTGKFKGKSIETPPaiAGNTNFTPAILKKSVFDIIGSlvlkgrLIeEESAFVDFFAGSGQMGLEAVSRGFARVVLYE 83 
2FPO_A        85 XDRAVSQQLIKNLATL-KA--G----NARVVNS--NAXSFLAQ----------K-GTPHNIVFVDPPFR----R-GL--- 136
WP_013682032  72 SSNDSVSLIRKNTNNF-----D----NVDVIKS--DAEKFLDNp----------lVRSAGVVYVDPPYA----F-D---- 121
NP_224801     72 ISIKAIQLIHTNSALL-GEq-L----PVVIFRQ--DAQSAIQRli-------kQ-KRSFDLIYIDPPYE----L-CNc-- 128
WP_013181236  73 HDRGSIRCIQENIQEL-GLa-D----CARAVIG--DVIKLLPKl------------GTFDVIYVDPPYF----E-KNrdf 127
WP_013942458  72 KNRLALQAIYKNLVNL-QLs-D----HATVFPG--DALLSLKKla-------qK-NASFDLIYIDPPYG----Q-KVpgs 130
WP_102242512  73 VNRHVLKTLEENRENLl-Vr-NhhkkNGEILCShfPAEKLIKQfrvdyekltdA-QKEETVIFLDPPYS----EkNI--- 142
WP_006340482  72 NQRYCIQCIQKNLENF-REe-D----HGQVFFN--DAFDFLQEsa-------vC-HEKFDIIYADPPYN----SfFTkkg 131
WP_014245208  73 PNAKVFALTKKNLSSIlKFskDl--gTGELIRS--DAFKFLQSflisyknfdqE-TQESTILFLDPPYE----LhQV--- 140
NP_220001     72 SSVEAVRLIRANLALL-DSn-L----PVHILKQ--DVRSALLRlg-------kQ-NRSFDIVYIDPPYA----L-ENa-- 128
NP_711002     84 LAWERSDNLRKLFSKF-G---N----NCQVYRK--DVFRFYDKl---------DiPEMSRIFFLDPPYSfwdkK-D---- 139
2FPO_A       137 -----LEETINLLedNGWLADEALI--YVESEVE-NGLPTVPAN-W-SL-H-RE--KVAGQVAYRLY----Q--REAQ 194
WP_013682032 122 -----VEVFLEKL--FKVVNRNAIV--CVEHDKK-RHLRGDF-GlF-KC-F-KS--KNFGKNTLDYFgvvdE------ 177
NP_224801    129 ----yVETLLQKIvsGNILNPEGTL--FLENAS---DEEIACEG-L-TL-R-RR--RKLGKTYLAEY----I--VEKD 185
WP_013181236 128 ---shSAEVLKAIdqSDLLAHGGML--FIEDSRSwEPDSGSLKT-L-RL-K-SS--RKVGRSMLHQF----E--R--- 185
WP_013942458 131 s-qtlLDATLTLIdtSNLLSSNGIL--FLEEITA-PTV--ILTN-L-TL-E-KE--RPIGDCHLYQY----ShcKl-K 191
WP_102242512 143 -----YIDVIKYLqaEPWF--FGQL--WVESDPK-KGIPK--EA-LsDMgLkAEkiYEQGDSYIFVT----Nf--PQl 201
WP_006340482 132 eslgfSEKILQLVneKSLLRMGGTL--FLEDSSAsLAEVEACGS-L-QL-K-SA--RQFGHSKLLEY----Q--NFLE 195
WP_014245208 141 -----YFDCLELIlsSGYC---GEV--WIESDQQ-KGV-KL-SE-LeKM-FpDSkvYRQGTSFILMV----R------ 193
NP_220001    129 ----fLQEVLSYVvqQSLLEPDGIL--FLENASP-QEI--LVQG-L-EL-R-KR--RKSGGTFLSEY----I--QQEN 185
NP_711002    140 -------EKIRTIs-dLLLSEDTTVavFVQSPVN-------P-G-W-SG-F-ET--RRFGKNFLTFQi---Ki--T-- 188
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