Conserved Protein Domain Family
T-box_TBX22-like

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cd20200: T-box_TBX22-like 
DNA-binding domain of T-box transcription factor 22 and related T-box proteins
TBX22 is a transcriptional regulator involved in developmental processes. Mutations in the T-Box transcription factor gene TBX22 are found in X-linked Cleft Palate with or without Ankyloglossia syndrome (CPX syndrome). TBX22 mutation is also associated with cleft lip and palate, and tooth agenesis. This subgroup belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.
Statistics
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PSSM-Id: 410326
Aligned: 5 rows
Threshold Bit Score: 417.399
Created: 8-Mar-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
DNA binding
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:based on related T-box transcription factors bound with DNA
  • Comment:T-box monomers dimerize upon DNA binding; some form weak dimers, others tight dimers, some may bind as non-associating monomers where the dimer is kept in register by the DNA

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                     ##                                #                
Q9Y458        90 KDIQMELQgSELWKRFHDIgTEMIITKaGRRMFPSVRVKVKGLDPGKQYHVAIDVVPVDSKRYRYVYHSSQWMVAGNTDh 169 human
XP_007890311 124 LAVQVELQgAELWKRFHEIgTEMIITKaGRRMFPAVRVKIKGLDLMKQYYIAMDIVPVDSKRYRYVYHSSQWMVAGNTEq 203 elephant shark
XP_018088559  80 EPVQVELQgSELWRRFHDIgTEMIITKaGRRMFPSVRIKVKGLDPSKQYYIAMDVTPVDSKRYRYVYHSSQWMVAGSTDh 159 African clawed ...
NP_989437     60 DEVQVELQgSELWKRFHEIgTEMIITKaGRRMFPSVRVKVKGLEPLQQYYIAIDVVPVDSKRYRYVYHSSQWMVAGNTDh 139 chicken
NP_001157933  22 RKVRVDLQgSDLWKRFHEIgTEMIITKvGRRMFPSIRVKVHNLDPLQQYSIAMDIMPMDSKKYRYVYHSSQWVIAGNTDh 101 zebrafish
Feature 1                                      #  #            ##                                
Q9Y458       170 lCIIPRFYVHpDSPCSGEtWMRQIISFDRmKLTNNemDDKGHIILqSMHKYKPRVHVIEQGss-vDLSQIQSLPTEGVKT 248 human
XP_007890311 204 sSLSPRLYVHpDSPASGEtWMKQIVSFDRvKLTNNdmDDKGHIILqSMHKYKPRLHVILKQad-aNLSVNQLLPTDGVQT 282 elephant shark
XP_018088559 160 sCITPRLYIHpDSPCSGEtWMRQIINFDRiKLTNNemDDKGHIILqSMHKYKPRVHIIVQDsr-fDLSQIQSLPAEGVKT 238 African clawed ...
NP_989437    140 sCITPRLYIHpDSPCSGEtWMRQIISFDRvKLTNNemDDKGHIILqSMHKYKPRVHVIAQDsr-fDLAQIQSLPAEGVRT 218 chicken
NP_001157933 102 sCIPPHLYVHpDSPCSGEnWMRQVISFDRvKLTNNelDDRGHIILkSMHKYRPRIHVILHCppecLSKRLLSLPADGVFT 181 zebrafish
Feature 1                   ####    #  ##  #######  
Q9Y458       249 FSFKETEFTTVTAYQNQQITKLKIERNPFAKGFRD 283 human
XP_007890311 283 FSFPETEFTTVTAYQNQQITRLKIDRNPFAKGFRD 317 elephant shark
XP_018088559 239 FSFKETEFTTVTAYQNQQITKLKIDRNPFAKGFRD 273 African clawed frog
NP_989437    219 FSFQETEFTTVTAYQNQQITKLKIDRNPFAKGFRD 253 chicken
NP_001157933 182 FSFPETQFTTVTAYQNQQITKLKIDRNPFAKGFRE 216 zebrafish

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