1ZAV


Conserved Protein Domain Family
Ribosomal_L10

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cd05797: Ribosomal_L10 
Click on image for an interactive view with Cn3D
Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These bacteria and eukaryotic sequences have no additional C-terminal domain, present in other eukaryotic and archaeal orthologs.
Statistics
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PSSM-Id: 240223
Aligned: 153 rows
Threshold Bit Score: 92.9526
Created: 7-Nov-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:23S rRNA interface [nucleic acid binding site]
Evidence:
  • Comment:Based on the binding of Haloarcula marismortui L10 ribosomal protein with 23S rRNA at a kink-turn site.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ##  #                                                       ####  #         
1ZAV_A      4 TRQQKELIVKEMSEIFKKT-SLILFADFL--------GFTVADLTELRSRLREkygdgaRFRVvKNTLLNLALKNAey-e 73  Thermotoga maritima
P57148      4 SIHDKKIIVSKINKISNTA-LSAVTADLQ--------GVCVNKINELRKSGREvg---vKMSIvQNTLLSLAIKNTvf-e 70  Buchnera aphidicol...
AAM75998    3 LCSRKKAAVSKAMTLIQGS-AALVPSMYA--------GISAVDIAALRKHCSScg---vTLRVmRNKLLITALAASvnrt 70  Candidatus Trembla...
NP_777675   4 DFKKKKELVTQINLIAKTA-LSIVVANPQ--------GIKSNDITQLRKLARKsn---vKLGVyRNTLLNLGIKNTpf-e 70  Buchnera aphidicol...
NP_871523   3 NRKNKENIISKINKITKSS-LSILIVDPT--------GITSNQMNNLRKSSRKln---vNIKQvRNTLMRFAIVDTef-d 69  Wigglesworthia glo...
NP_878834   4 SIKKKEQIVCKIQEVFKIS-SSAVIASLS--------NITSNSMNQLRKESRDcg---vYIKViPNTLLRRALKNSly-e 70  Candidatus Blochma...
AAZ41185    4 NLQKKEEIICKIHETATRA-VSVVVATLD--------GIAVNEVTKLRKEARDig---vCVHViRNTLMRKVIENTpl-a 70  Candidatus Blochma...
XP_954413  56 FRAGKIELVKSLKEQLKES-QAILQFRVTrmnhgvrsYIKDNIMKHIEAQDGKlp---yKMQIvKNTMMSRAIAGTrf-e 130 Theileria annulata...
YP_506558   1 MNERKAAFLAKLEMILEQKvVLVVKVSSLs-------AQEVFSVRERLWDFGG------NFNFvKNSLARIAVENSsl-s 66  Neorickettsia senn...
YP_802599   4 NRNKKKKIIKKINNVANKS-LSIITANPS--------KITVNIINKLRKKAKInn---iKIYViRNTLLKKSLKKTif-s 70  Buchnera aphidicol...
Feature 1                                                                                     
1ZAV_A     74 GYEE---FLKGPTAVLYVTeg-------dPVEAVKIIYNFYKdkka-dlsRLKGGFLe-GKKFTA-EEVENIAKLPsKEE 140 Thermotoga maritima
P57148     71 CLKK---KLKGSTFIAYSMi--------hPGSGARLFKEFSKknt---qfKITGAAFe-GKLLSI-LEINQLADMPtYKE 134 Buchnera aphidicol...
AAM75998   71 VLARlpcTLRGQLLYAFGPs--------iERIACALSSANAKg------lEPVYGMElpGRIVSQ-CEIAAMMNLPpIDA 135 Candidatus Trembla...
NP_777675  71 CLKN---ILIGPTLIAYSSe--------hPGSAAKLLKNFSMsqssnpnfKILGAVFe-GKAISG-SNINSLADIPtFNE 137 Buchnera aphidicol...
NP_871523  70 CLEK---YIKGSNLIAFSHs--------hPGSAARIFKNFTKenn---kiKIKLAVFe-RKIITD-SNIDYLANLPtHEE 133 Wigglesworthia glo...
NP_878834  71 CLSN---FCIGQNIIAFSIn--------nPSDAARVLVNFSKnn----eyFKIAGAVceGNFIDK-DQIDMLSRLPnYNE 134 Candidatus Blochma...
AAZ41185   71 CLRE---ILTGQNIVAFSMn--------qPRDSARIFVKFTKnhe---hfKIKGAVFe-GKFIPA-SKINLLSDLPnHKE 134 Candidatus Blochma...
XP_954413 131 ALTP---NLEKTNLYFFVYddtivpklvsVINGMRLASKIVKwr-----fEPSFACFd-NTVIDS-LRLRCLSSLPeKSD 200 Theileria annulata...
YP_506558  67 FLSE---YFSKSVAFVHCSq--------nVPEFLRCILKFSGeygk-drlEILGGKY--DKVVFGrRLMDEFSKLPnETH 132 Neorickettsia senn...
YP_802599  71 KLIN---IIKGPILVGFSMk--------hPGSASRLFIKFNKkni---nfKILNAIYe-KKILNI-HEIKDLANLPtHIE 134 Buchnera aphidicol...
Feature 1                                
1ZAV_A    141 LYAMLVGRVKA-PITGLVFALSGILRN 166 Thermotoga maritima
P57148    135 AIIKLLLTWKMlIAGKLIYTLSAIKQK 161 Buchnera aphidicola (Acyrthosiphon pisum)
AAM75998  136 LWARVTHLVAY-PITQLTNTLRAIASR 161 Candidatus Tremblaya princeps
NP_777675 138 ALRRFIIIAKEiSAGKLLRILVSIKNI 164 Buchnera aphidicola str. Bp (Baizongia pistaciae)
NP_871523 134 SVINFINIIQEaSIKKLIRILILINNN 160 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
NP_878834 135 SLLQLILILKVmSVGKLINVLKILSNQ 161 Candidatus Blochmannia floridanus
AAZ41185  135 AIFRLITIMKTsSIGSLIHILHILSNQ 161 Candidatus Blochmannia pennsylvanicus str. BPEN
XP_954413 201 LCARIPHFLRL-PVYRLIDSLRVSQSL 226 Theileria annulata strain Ankara
YP_506558 133 VYLSLINAINA-VPIALVNSLDGPARL 158 Neorickettsia sennetsu str. Miyayama
YP_802599 135 SITKFVILLKEiSLGKFIRVLQNITKK 161 Buchnera aphidicola str. Cc (Cinara cedri)

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