2JJQ


Conserved Protein Domain Family
TrmA

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COG2265: TrmA 
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tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification
Statistics
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PSSM-Id: 441866
Aligned: 799 rows
Threshold Bit Score: 179.602
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2JJQ_A        19 ShMRGVIRKLNDDGFGVL-----------------------KGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPL 75 
WP_009514530  19 AeIELEIATLTNLGVGLGrvplapa---------adggeqkWVVMVPFALPGERVRARVFRNHKNYSEADLLDVLTPSPE 89 
WP_041419091  16 KiLKSKIEKLVFGGAGLSrd-------------------qgFIIFVPYTAPGDLVEVTITQEKKNYKFAKLHRLIQSGPQ 76 
WP_011735672   8 Q-L-ISIDRLAFGGSGVGri-------------------dgKVCFVPFACPGDELLVRITAEKRSYLTARIISIVTPGQD 66 
WP_044892143  20 QeIELEISTLTNLGSGLGrvpltgsqlstlgsqltaqpvagWVVMVPFTLPGERVRARVFRNHKNFSEADLVSVLTPSPH 99 
WP_046298977  16 HeLEVEIATLTNLGSGLArvplpd------------dpearWVLMIPFTLPGEKVRVRVFRNHKNYSEADLVEVLVPAPE 83 
WP_040199897   5 S--EIYIDALAYGGAGVGrl-------------------dgKAVFVPGVVPGDWVLFRPRREKKRYIEGELVFIASAAPN 63 
WP_083756448  23 QkVEITIESVAFGGSGIGrf-------------------agLVIFVPFTVDGDRVEIEITEVRQSYAKGRMCRILKPSPF 83 
WP_059059823   9 SiITGDIQSIAFGGEGILrh-------------------qgFVVFVPFTAPGDKIVCRITEVKKSFAKGEVIRLEHLSPQ 69 
WP_099093259  16 TeLELEISTLTNLGVGLGrvqv---------------gegkWVVMVPFTLPGEKVKVRVYRNHKNFSEADLLAVLTPSPH 80 
2JJQ_A        76 RV-GPRCKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILg--------FEVe---VVPSPKIFGHRNRIDLAITKd----- 138
WP_009514530  90 RVaTPPCPVFGRCGGCQYQNLDYDAQLRWKRRQVAELLrhma--gieAEVs--sVIGSPRQYGYRSKITPHFNLprd--- 162
WP_041419091  77 RT-SPRCPYYSQCGGCQLQHLTPEGQLEAKRTFLEDAFg---------pVp--pLVPSPEVWHYRSHIRLNLe------- 137
WP_011735672  67 RI-TPPCPLFGSCGGCSWQHIAYHRQLEEKRRIFADALwrga--rapgELva-dVVASPLTYGYRSRVQFKLHGagp--- 139
WP_044892143 100 RV-MPGCPLFGRCGGCQYQHLAYAEQLAWKRRQVAELLqhlg--gveFAVs--pVIPSPREYGYRSKITPHFAApkaart 174
WP_046298977  84 RI-APRCPLFTRCGGCQYQHFDYEAQLGWKRRHVEELLkhma--gleHPVa--pVIGSPVPYGYRSKLTPHFNPhqhppg 158
WP_040199897  64 RI-DACCAVFGKCGGCHWQCLPYAEQLRWKKNLLQDFLvrqagadpnAELa---MRAAPNPWHYRSRIQIKCRRt----- 134
WP_083756448  84 RT-VPECSLYERCGGCQYQHIAYTHQLEIKKNQVIDAFerig-khpaPPVr--dVIASPMPYAYRGKAEFHISFk----- 154
WP_059059823  70 RI-KPPCPYFGTCGGCQIQHLNDEAQAKYKLSAVTDALkrig----hlkVppaqIVPAHLKWAYRRHITLHLKPv----- 139
WP_099093259  81 RI-DPRCPLFGRCGGCQYQHLTYAEQLKWKRQQVEELLkyma--gveFAVn--pVIGSPREFGYRSKLTPHFSAqarrre 155
2JJQ_A       139 -----------------------------G--------IGFRERGKwWKIVDIDE-CPVFGKTSREAIERLKEFIEEeki 180
WP_009514530 163 ---------------------------rgDpaaaatlpVGFLRQGTrFDILDVPR-CEIATEAINARLPEVRAATRA--- 211
WP_041419091 138 --------------------------------------NGSFGFKN-NGLIEIDS-CSLFLPIEHDFFRILRQHLQN--- 174
WP_011735672 140 -----------------------------------nlrIGFYRQGT-HFVEDAGQgCPIALPVINRILGSLREMLPA--- 180
WP_044892143 175 iaagstpaaqessvpaavstpdgpgearaSsaavpdwpIGFLRQGTrFDIIDVPR-CPIATDAINTRLAEVRAELRT--- 250
WP_046298977 159 -----------------------rpeavpSadt---fpIGFLRHGNrFELIDVPA-CPIATDAINARFTELRGKVRA--- 208
WP_040199897 135 ----------------------------pRgf-----vMGFYRANT-HFVVDIEE-CPIAAEALNGLLPQLRGCLAD--- 176
WP_083756448 155 -----------------------------Sgr----lpVIGYKEAAdSRIVPVSR-CAIVDESVNRSLTALRGKLNA--- 197
WP_059059823 140 ----------------------------gQgf-----eAGYIGVDH-RSLVFIQS-CPIFNAPQDPIVKQLQELVSS--- 181
WP_099093259 156 ------------------------gatdqDpvtseshpIGFLKQSSrFELVDVPH-CDIATPEINAKLPEVRAKTHA--- 207
2JJQ_A       181 svwnI-K---KDEGFLRYMVLREgkfteevmvnfvtkegnlpdptnyfdfdsiywsvnrsksdvsygdierfwGKEFI-- 254
WP_009514530 212 ----KvAagdyqrG--ATLLLRDasgav------------------------------------------ttryDDIV-- 241
WP_041419091 175 ----L-Se----sGSF--RVFKAtpshfvlafsfpkrlpkarrhfv----ktlmealplqgismkspsgeehfGKTTI-- 237
WP_011735672 181 ----F-P---DPT-KIPQINLECaekgavvivnyigddhqgakaffreraaqleqatalylqtgrkstlqkvfGDDLLqy 251
WP_044892143 251 ----Qrdr--ytrG--ATLLLRDaggrv------------------------------------------ttdyDAVV-- 278
WP_046298977 209 ----RaAaggyprG--STLLIRDasghv------------------------------------------ttdyDEII-- 238
WP_040199897 177 ----C-R---HSD-QVPQIDLAIddegaraivvhfigsdpqpvvdavl-pickaesvalflqqgrketlrhihGDPAL-- 244
WP_083756448 198 ----------------ISAAGRRggkkeervilwsd------------------------tgkaavdpgvsggRGGLV-- 235
WP_059059823 182 ----L-SnstQQEGr---VMILKnhrdqyilsfqfaslsgldlhtfe---tslqhyptftgiivqspqeqrtfGDPYC-- 248
WP_099093259 208 ----RlAageykrD--STLLLRHaqegv------------------------------------------itdyDAVI-- 237
2JJQ_A       255 -----R-ERL--D-------------------------DVDYLIHPNSFFQTNSYQAVNLVRKVSELVE---GEKILDMY 298
WP_009514530 242 -----T-ETV--G-------------------------DLRLRFLARDFFQNNPFILPAFTGYVREQAAaggARFLVDAY 288
WP_041419091 238 -----S-NII--C-------------------------GLPVSFSPYGFMQNNPFLTPRLYETLVDWARpe-gKSILDLY 283
WP_011735672 252 sqegeS-STA--P-------------------------ACSLTYRPGGFAQVNAAQNSALLRLVREFADcrrDDQILDLY 303
WP_044892143 279 -----T-EEI--GvvglddagaekpgltspapsnragaPLRLHFLARDFFQNNPFILPAFTSYVREQAAasgARFLVDAY 350
WP_046298977 239 -----T-ETItptd---------------------gsaTLKLRFLARDFFQNNPFILPAFTAYVRAQAAasgARFLVDAY 291
WP_040199897 245 -----HiHPLreG-------------------------ELKLAYPVGGFAQVNLDQNRQLVAELLDCLGnvqGLRILDLF 294
WP_083756448 236 -----M-RPV--K-------------------------EKMLRAPFQGFFQANSALVGSMVDSVIRACAltgKETVLDAY 282
WP_059059823 249 -----E-QKL--E-------------------------GLTFRFTPQAFVQNHPEQSTNIYKHICTLAGehsPKKILDLY 295
WP_099093259 238 -----H-EKI--G-------------------------DLRLHFLARDFFQNNPFILPAFTGYVREQAAgsgARFLVDAY 284
2JJQ_A       299 SGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK------GFDT--VIVDPPRAGLHPR 369
WP_009514530 289 CGSGLFALTAASAFERVAGIEISESSIAFARQNAELNRIQnATFQAGDASAIFAGlaf-paAGTA--VIIDPPRKGCDEP 365
WP_041419091 284 SGVGITSLLLSRAGGSVIGVEESAAAIRCAQENQNQSGILgVQFKLGRVEEIlkt----arPVDL--VIVNPPKTGLSKS 357
WP_011735672 304 CGNGNFSLPLARGVAAVTGIEEYGDSIAAARHNARLNGITnVEFICADAAAGAGKlmgdgrRFPT--IILDPPRSGA-AD 380
WP_044892143 351 CGSGLFALASASAFERVAGVEISESSVRFARENAAANGITnASFLAADAAAIFAGlaf-paAESV--VVIDPPRKGCDRE 427
WP_046298977 292 CGSGLFALSAATAFEQVAGIEISESSIVFARQNATANGLAnVTFQAGDAADIFAGlaf-apADTA--VIIDPPRKGCDES 368
WP_040199897 295 CGMGNLSLPLVAAGAEVTGVEDFAPAIDWARSNAAAHGLn-ARFVHAPAERILASqp--diSWDV--VVLDPPRRGA-YD 368
WP_083756448 283 CGSGLFSLFLASSARQLFGVDADGEAVHCAAENLSKEGISnAEFFAGDVGEILRHtfl-ktQQSVdiVVLDPPRIGCSSD 361
WP_059059823 296 CGFGITSLLLSRQGHTVTGIEYNPDAIRFAQDNGHLNHLKqAHFLQGDVEKVLPHclktegPPDL--ILMNPPRTGLSKG 373
WP_099093259 285 CGSGLFALSCAPAFERVSGIELSETSIKFATENAAANGITnTVFRAGDAAQIFAGldf-ppADTA--VVIDPPRKGCDES 361
2JJQ_A       370 LVKRLNREKPGVIVYVSCNPETFARDVKMLD---YRIDEIVALDMFPHTPHVELVAKLV 425
WP_009514530 366 FLQQLFGYGPRAVVYVSCDPATQMRDLRHFLaagYELTAVQPFDLFPQTRHLECVITLR 424
WP_041419091 358 VRDGLLRLQPTEILYISCMPTTLKRDLNDLIg--YKREKILGFDLFPQTTHLETLVKIT 414
WP_011735672 381 LLEHIPRLGADKIIYISCDPSTLARDCGVLFgkgYTVVSSVPVDMFPQTFHLESVTLLR 439
WP_044892143 428 FLQQLFAFGPRAVVYVSCDPATQMRDLRDFLaagYELIAVQPFDLFPQTRHLECVITLR 486
WP_046298977 369 FLKQLFAYGPRAVVYVSCDPATQMRDLRAFTaagYELTAVQPFDLFPQTRHLECVITLR 427
WP_040199897 369 VARELVRRAPERIVYVSCDPSTLARDLKPLLhngYRLEHAVGLDLFPQTFHIESLVLLK 427
WP_083756448 362 VLEALKSLGPARIIYISCNPATQARDVRRLRdsgYILRDLQPIDMFPQTKHIEIVGLLE 420
WP_059059823 374 VIQTVLKAAPTELIYVSCMPATLARDLALFCqdqYDIQQCIVYDMFPQTAHVETLIYLK 432
WP_099093259 362 FLSQLFAFGPRAVVYVSCDPATQMRDLKGFLaagYKLTAVQPFDLFPQTRHLECVITLV 420
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