3OE0,4MBS,4XT3,4RWS,2LNL


Conserved Protein Domain Family
7tmA_Chemokine_R

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cd14984: 7tmA_Chemokine_R 
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classical and atypical chemokine receptors, member of the class A family of seven-transmembrane G protein-coupled receptors
Chemokines are principal regulators for leukocyte trafficking, recruitment, and activation. Chemokine family membership is defined on the basis of sequence homology and on the presence of variations on a conserved cysteine motif, which allows the family to further divide into four subfamilies (CC, CXC, XC, and CX3C). Chemokines interact with seven-transmembrane receptors which are typically coupled to G protein for signaling. Currently, there are ten known receptors for CC chemokines, seven for CXC chemokines, and single receptors for the XC and CX3C chemokines. In addition to these classical chemokine receptors, there exists a subfamily of atypical chemokine receptors (ACKRs) that are unable to couple to G-proteins and, instead, they preferentially mediate beta-arrestin dependent processes, such as receptor internalization, after ligand binding. The classical chemokine receptors contain a conserved DRYLAIV motif in the second intracellular loop, which is required for G-protein coupling. However, the ACKRs lack this conserved motif and fail to couple to G-proteins and induce classical GPCR signaling. Five receptors have been identified for the ACKR family, including CC-chemokine receptors like 1 and 2 (CCRL1 and CCRL2), CXCR7, Duffy antigen receptor for chemokine (DARC), and D6. Both ACKR1 (DARC) and ACKR3 (CXCR7) show low sequence homology to the classic chemokine receptors.
Statistics
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PSSM-Id: 341319
Aligned: 26 rows
Threshold Bit Score: 221.704
Created: 23-Sep-2008
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:chemokine binding site [polypeptide binding site]
Evidence:
  • Comment:based on structures of chemokine receptors with bound ligands (chemokines, peptides, or chemical antagonists/agonists)
  • Structure:4RWS: Human chemokine receptor CXCR4 binds a viral chemokine; contacts at 4A
    View structure with Cn3D
  • Structure:4XT3: Cytomegalovirus GPCR US28 in complex with the chemokine domain of human CX3CL1 (fractalkine), contacts 4A
    View structure with Cn3D
  • Structure:3OE0: Human CXCR4 chemokine receptor in complex with a cyclic peptide antagonist, contacts at 4A.
    View structure with Cn3D
  • Structure:4MBS: Human Ccr5 chemokine receptor binds the HIV entry inhibitor maraviroc, contacts at 4A.
    View structure with Cn3D
  • Comment:Small-molecule chemical ligands tend to bind deeper within the receptor core, compared to a peptide ligand neurotensin, which binds towards the extracellular surface of its receptor.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #                                                #  #                #  ##
3OE0_A     49 IFLPTIYSIIFLTGIVGNGLVILVMGYQKKlrsmTDKYRLHLSVADLLFVITLPFWAVDAvanwy-fgnflCKAVHVIYT 127
4XT3_A     42 PVTLFLYGVVFLFGSIGNFLVIFTITWRRRiqcsGDVYFINLAAADLLFVCTLPLWMQYLldhns-lasvpCTLLTACFY 120 Cytomegalovirus
4RWS_A     48 IFLPTIYSIIFLTGIVGNGLVILVMGYQKKlrsmTDKYRLHLSVADLLFVITLPFWAVDAvanwy-fgnflCKAVHVIYT 126
P46094     32 LATTVLYCLVFLLSLVGNSLVLWVLVKYESleslTNIFILNLCLSDLVFACLLPVWISPYhwgwv-lgdflCKLLNMIFS 110 human
P51679     40 LFLPPLYSLVFVFGLLGNSVVVLVLFKYKRlrsmTDVYLLNLAISDLLFVFSLPFWGYYAadqwv-fglglCKMISWMYL 118 human
AAH82709   34 KFLVPVYIFVFLLGIIGNALVIIILIQYKKlrnmTDIYLLNLAISDLLFVISLPFWAYYItkdwv-fgdalCKILSGLYL 112 African clawed frog
P32246     35 QLLPPLYSLVFVIGLVGNILVVLVLVQYKRlknmTSIYLLNLAISDLLFLFTLPFWIDYKlkddwvfgdamCKILSGFYY 114 human
P49238     32 VFLSIFYSVIFAIGLVGNLLVVFALTNSKKpksvTDIYLLNLALSDLLFVATLPFWTHYLinekg-lhnamCKFTTAFFF 110 human
P51685     36 LLLAVFYCLLFVFSLLGNSLVILVLVVCKKlrsiTDVYLLNLALSDLLFVFSFPFQTYYLldqwv-fgtvmCKVVSGFYY 114 human
P51677     35 QFVPPLYSLVFTVGLLGNVVVVMILIKYRRlrimTNIYLLNLAISDLLFLVTLPFWIHYVrghnwvfghgmCKLLSGFYH 114 human
Feature 1                                                                         ######      
3OE0_A    128 VNLYSSVWILAFISLDRYLAIVHatnsqrprklLAEKVVYVGVWIPALLLTIPDFIFanvseaddryICDRFYPnd---l 204
4XT3_A    121 VAMFASLCFITEIALDRYYAIVYmry----rpvKQACLFSIFWWIFAVIIAIPHFMVvtk----kdnQCMTDYDyle-vs 191 Cytomegalovirus
4RWS_A    127 VNLYSSVWILAFISLDRYLAIVHatnsqrprklLAEKVVYVGVWIPALLLTIPDFIFanvseaddryICCRFYPnd---l 203
P46094    111 ISLYSSIFFLTIMTIHRYLSVVSplstlrvptlRCRVLVTMAVWVASILSSILDTIFhkv----lssGCDYSELt----- 181 human
P51679    119 VGFYSGIFFVMLMSIDRYLAIVHavfslrartlTYGVITSLATWSVAVFASLPGFLFstcyternhtYCKTKYSlns-tt 197 human
AAH82709  113 TGFYGASFFIILLTLDRYLAIVHvifamkvrtvKFSIFTSIVLWGIAVLFSLPGFIFykaekqidvwTCSPYYTga---- 188 African clawed frog
P32246    115 TGLYSEIFFIILLTIDRYLAIVHavfalrartvTFGVITSIIIWALAILASMPGLYFsktqwefthhTCSLHFPheslre 194 human
P49238    111 IGFFGSIFFITVISIDRYLAIVLaansmnnrtvQHGVTISLGVWAAAILVAAPQFMFtkq----kenECLGDYPevlqei 186 human
P51685    115 IGFYSSMFFITLMSVDRYLAVVHavyalkvrtiRMGTTLCLAVWLTAIMATIPLLVFyqvasedgvlQCYSFYNqqt-lk 193 human
P51677    115 TGLYSEIFFIILLTIDRYLAIVHavfalrartvTFGVITSIVTWGLAVLAALPEFIFyeteelfeetLCSALYPedtvys 194 human
Feature 1      #  ##                                                                          
3OE0_A    205 wVVVFQFQHIMVGLILPGIVILSCYCIIISKlshnifemlrideglrlkiykdtegyytigighlltkspslnaakseld 284
4XT3_A    192 yPIILNVELMLGAFVIPLSVISYCYYRISRIvav---------------------------------------------- 225 Cytomegalovirus
4RWS_A    204 wVVVFQFQHIMVGLILPGIVILSCYCIIISKlshnifemlrideglrlkiykdtegyytigighlltkspslnaakseld 283
P46094    182 -WYLTSVYQHNLFFLLSLGIILFCYVEILRTlfr---------------------------------------------- 214 human
P51679    198 wKVLSSLEINILGLVIPLGIMLFCYSMIIRTlqh---------------------------------------------- 231 human
AAH82709  189 wKTIFTLVMSILGLFIPLVVMIFCYSRIIYTllrc--------------------------------------------- 223 African clawed frog
P32246    195 wKLFQALKLNLFGLVLPLLVMIICYTGIIKIllr---------------------------------------------- 228 human
P49238    187 wPVLRNVETNFLGFLLPLLIMSYCYFRIIQTlfs---------------------------------------------- 220 human
P51685    194 wKIFTNFKMNILGLLIPFTIFMFCYIKILHQlkr---------------------------------------------- 227 human
P51677    195 wRHFHTLRMTIFCLVLPLLVMAICYTGIIKTllr---------------------------------------------- 228 human
Feature 1                                                                                     
3OE0_A    285 kaigrntngvitkdeaeklfnqdvdaavrgilrnaklkpvydsldavrraalinmvfqmgetgvagftnslrmlqqkrwd 364
4XT3_A        --------------------------------------------------------------------------------     Cytomegalovirus
4RWS_A    284 kaigrntngvitkdeaeklfnqdvdaavrgilrnaklkpvydsldavrraalinmvfqmgetgvagftnslrmlqqkrwd 363
P46094        --------------------------------------------------------------------------------     human
P51679        --------------------------------------------------------------------------------     human
AAH82709      --------------------------------------------------------------------------------     African clawed frog
P32246        --------------------------------------------------------------------------------     human
P49238        --------------------------------------------------------------------------------     human
P51685        --------------------------------------------------------------------------------     human
P51677        --------------------------------------------------------------------------------     human
Feature 1                                                                  #      #  #        
3OE0_A    365 eaavnlaksrwynqtpnrakrvittfrtgtwdaysgsgHQKRKALKPTVILILAFFACWLPYYIGISIDSFIlleiikqg 444
4XT3_A    226 -----------------------------------sqsRHKGRIVRVLIAVVLVFIIFWLPYHLTLFVDTLKllkwisss 270 Cytomegalovirus
4RWS_A    364 eaavnlaksrwynqtpnrakrvittfrtgtwdaysgsgHQKRKALKPTVILILAFFACWLPYYIGISIDSFIlleiikqg 443
P46094    215 -----------------------------------srsKRRHRTVKLIFAIVVAYFLSWGPYNFTLFLQTLFrtqii-rs 258 human
P51679    232 -----------------------------------cknEKKNKAVKMIFAVVVLFLGFWTPYNIVLFLETLVelevl-qd 275 human
AAH82709  224 -----------------------------------kseRKKHKAVKLIFIIMVVFFIFWMPYNIVYIMHSFQdsdsi-na 267 African clawed frog
P32246    229 -----------------------------------rpnEKKSKAVRLIFVIMIIFFLFWTPYNLTILISVFQdflft-he 272 human
P49238    221 -----------------------------------cknHKKAKAIKLILLVVIVFFLFWTPYNVMIFLETLKlydff-ps 264 human
P51685    228 -----------------------------------cqnHNKTKAIRLVLIVVIASLLFWVPFNVVLFLTSLHsmhil-dg 271 human
P51677    229 -----------------------------------cpsKKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQsilfg-nd 272 human
Feature 1        #   #  ##  #                         
3OE0_A    445 cefENTVHKWISITEALAFFHCCLNPILYAFLGakFKTSA 484
4XT3_A    271 cefERSLKRALILTESLAFCHCCLNPLLYVFVGtkFRQEL 310 Cytomegalovirus
4RWS_A    444 cefENTVHKWISITEALAFFHCCLNPILYAFLGakFKTSA 483
P46094    259 ceaKQQLEYALLICRNLAFSHCCFNPVLYVFVGvkFRTHL 298 human
P51679    276 ctfERYLDYAIQATETLAFVHCCLNPIIYFFLGekFRKYI 315 human
AAH82709  268 ckmNKKLDEAVQWAEAISYFHCCLNPVIYAFVGekFRKYL 307 African clawed frog
P32246    273 ceqSRHLDLAVQVTEVIAYTHCCVNPVIYAFVGerFRKYL 312 human
P49238    265 cdmRKDLRLALSVTETVAFSHCCLNPLIYAFAGekFRRYL 304 human
P51685    272 csiSQQLTYATHVTEIISFTHCCVNPVIYAFVGekFKKHL 311 human
P51677    273 cerSKHLDLVMLVTEVIAYSHCCMNPVIYAFVGerFRKYL 312 human

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