Conserved Protein Domain Family
acnA_upstr_60

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NF033069: acnA_upstr_60 
acnA regulatory region 60-length spurious protein
This HMM describes an apparently spurious protein translation from the region upstream of the aconitase A gene acnA in Escherichia coli str. K-12 substr. MG1655, positions 1335595-1335774, and in related strains. Evidence against its expression as a real protein include a putative TTG start codon, the lack of good RBS, non-conservative substitutions where found, the absence of credible homologs in any species besides E. coli, and a DNA region in Salmonella enterica LT2 in which one third of the translation is present, but the other two thirds are missing.
Statistics
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PSSM-Id: 333747
Aligned: 11 rows
Threshold Bit Score: 112.288
Created: 24-Apr-2023
Updated: 3-May-2023
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
KHH67166  1 MVLDGRVFSVNALLGRIPLDHYSLIPDPAAAGVFICFPQGFSSFINLGCYQIVTRCLCYL 60 
KHH53649  1 MVLDGRVFSVDALLGRTPLDHYSLIPDPVAAGFSFALPQGFSSFINFGCYQIVTRCLCYL 60 
KHI45634  1 MVLDGRVFSVDALLGRTPLDHYSLIPDPVAAGFSFALPQAFSSFINLGCYQIVTRCLCYL 60 
KJW52815  1 MILDGRVFSVDALLGRTPLDHYSLIPDPAAAGFSFALPQAFSSFINLGCYQIVTRCLCYL 60 
ESA99528  1 MVLDGRVFSVDALLGRTPLDHYSLILDPAAAGFSFALPQAFSSFINLGCYQIVTRCLCYL 60 
KIE78404  1 MVLDGRIFSVDALLGRTPLDHYSLIPDPAAAGFSFVLPQAFSSFINLGCYQIVTRCLCYL 60 
KIH06256  1 MVLDGRIFSVDALLGRTPLDHYSLIPEPVAAGFSFALPQGFSSFINLGCYQIVTRCLCYL 60 
EFF12619  1 MVLDGCIFSVDALLGRTPLDHYSLIPDPAAAGFSFALPQGFSSFINLGCYQIVTRCLCYL 60 
KHI31929  1 MVLDGCIFSVDSLLGRTPLDHYSLILDPAAAGLSFALPQGFSSFINLGCYQIVTRCLCYL 60 
KIY28326  1 MVLDGCIFSVDALLGRTPLDHYSLILDPAAAGLSFALPQGFSSFINLGCYQIVTRCLCYL 60 
KHI43938  1 MVLDGRVFSVDALLGRTPLDHYSLILDPAAAGLSFALPQDFSSFINLGCYQIVTRCLCYL 60 
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