"Genomic Islands" - Books

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Select item 14152801.

Madame Curie Bioscience Database [Internet].

Austin (TX): Landes Bioscience; 2000-2013.

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Select item 30778622.

Enterococci: From Commensals to Leading Causes of Drug Resistant Infection [Internet].

Gilmore MS, Clewell DB, Ike Y, et al., editors.

Boston: Massachusetts Eye and Ear Infirmary; 2014-.

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Select item 50088843.

The Pangenome: Diversity, Dynamics and Evolution of Genomes [Internet].

Tettelin H, Medini D, editors.

Cham (CH): Springer; 2020.

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Select item 54017684.

Streptococcus pyogenes: Basic Biology to Clinical Manifestations [Internet]. 2nd edition.

Ferretti JJ, Stevens DL, Fischetti VA, editors.

Oklahoma City (OK): University of Oklahoma Health Sciences Center; 2022 Oct 8.

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Select item 42037205.

Streptococcus pyogenes : Basic Biology to Clinical Manifestations [Internet].

Ferretti JJ, Stevens DL, Fischetti VA, editors.

Oklahoma City (OK): University of Oklahoma Health Sciences Center; 2016-.

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Select item 30166026.

The Science and Applications of Microbial Genomics: Workshop Summary.

Institute of Medicine (US) Forum on Microbial Threats.

Washington (DC): National Academies Press (US); 2013.

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Select item 44036687.

StatPearls [Internet].

Treasure Island (FL): StatPearls Publishing; 2026 Jan-.

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Select item 14589848.

GeneReviews® [Internet].

Adam MP, Bick S, Mirzaa GM, et al., editors.

Seattle (WA): University of Washington, Seattle; 1993-2026.

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Select item 28215249.

PDQ Cancer Information Summaries [Internet].

Bethesda (MD): National Cancer Institute (US); 2002-.

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Select item 189578810.

Molecular Biology of the Cell. 4th edition.

Alberts B, Johnson A, Lewis J, et al.

New York: Garland Science; 2002.

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Select item 191116411.

Genomes. 2nd edition.

Brown TA.

Oxford: Wiley-Liss; 2002.

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Select item 538535012.

Introduction to Epigenetics [Internet].

Paro R, Grossniklaus U, Santoro R, et al.

Cham (CH): Springer; 2021.

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Select item 248683813.

The New Science of Metagenomics: Revealing the Secrets of Our Microbial Planet.

National Research Council (US) Committee on Metagenomics: Challenges and Functional Applications.

Washington (DC): National Academies Press (US); 2007.

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Select item 408515614.

Biological Agents.

IARC Working Group on the Evaluation of Carcinogenic Risks to Humans.

Lyon (FR): International Agency for Research on Cancer; 2012. (IARC Monographs on the Evaluation of Carcinogenic Risks to Humans, No. 100B.)

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Select item 488975015.

Computational Biology [Internet].

Husi H, editor.

Brisbane (AU): Codon Publications; 2019 Nov 21.

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Select item 504965016.

Reconciling Microbial Systematics & Genomics: This report is based on a colloquium, sponsored by the American Academy of Microbiology, convened September 27–28, 2006, in Washington, DC.

Washington (DC): American Society for Microbiology; 2006.

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Select item 219516217.

StemBook [Internet].

Cambridge (MA): Harvard Stem Cell Institute; 2008-.

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Select item 504963618.

Microbial Evolution: This report is based on a colloquium convened by the American Academy of Microbiology on August 28-30, 2009, in San Cristobal, Ecuador.

Washington (DC): American Society for Microbiology; 2011.

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Select item 318183219.

In the Light of Evolution: Volume III: Two Centuries of Darwin.

National Academy of Sciences (US); Avise JC, Ayala FJ, editors.

Washington (DC): National Academies Press (US); 2009.

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Select item 261450420.

Critical Needs and Gaps in Understanding Prevention, Amelioration, and Resolution of Lyme and Other Tick-Borne Diseases: The Short-Term and Long-Term Outcomes: Workshop Report.

Institute of Medicine (US) Committee on Lyme Disease and Other Tick-Borne Diseases: The State of the Science.

Washington (DC): National Academies Press (US); 2011.

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FIGURE 3-2Genomic islands in the Prochlorococcus MIT9312 genome (ISL 1-5) compared to metagenomic data from the Sargasso Sea and the Pacific Ocean

A. PRE1, 48 bp repetitive element; hli, high light inducible genes. B. Blue dashes represent nucleotide identity of individual Prochlorococcus DNA fragments in the Sargasso Sea metagenomic dataset; the blue line represents average coverage; C. Blue lines represent individual Prochlorococcus large genome fragments (36 kbp) in a Pacific Ocean metagenomic dataset. Black lines represent total coverage of all the fragments across the Prochlorococcus MIT9312 genome. SOURCE: Coleman et al. (2006). Genomic islands and the ecology and evolution of Prochlorococcus. Science 311: 1768–70. Reprinted with permission from AAAS.

From Genomics to Metagenomics: First Steps.

National Research Council (US) Committee on Metagenomics: Challenges and Functional Applications. The New Science of Metagenomics: Revealing the Secrets of Our Microbial Planet. Washington (DC): National Academies Press (US); 2007.
Figure 2.

E. faecalis genome plot. The outermost ring shows E. faecalis V583 chromosomal (scaffold 4) and plasmid scaffolds (scaffold 1, pTEF2; scaffold 2, pTEF3; scaffold 3, pTEF1), with each V583 gene represented as a radial position along the ring. The locations of V583 variable regions are shown (98): A, integrated plasmid; B, prophage 1; C, PAI; D, prophage 2; E, prophage 3; F, putative island efaB5; G, prophage 4; H, prophage 5; I, putative island; J, vancomycin resistance (vanB) transposon; K, integrated plasmid; L, prophage 6; M, prophage 7. Seventeen additional E. faecalis genomes are represented by the rings below V583. Genes are colored by phylogenetic distance from V583 (from dark to light green with increasing phylogenetic distance). Strains shown, from outermost to innermost rings, are V583, T11, OG1RF, Merz96, T8, T2, D6, X98, T3, T1, Fly1, CH188, HIP11704, ATCC4200, E1Sol, AR01/DG, DS5, and JH1. Patterns suggestive of recombination (darker colored genes indicate close phylogenetic relatedness to V583) occur in Merz96, T2, and JH1, which flank genomic islands.

Enterococcal Genomics.

Gilmore MS, Clewell DB, Ike Y, et al., editors. Enterococci: From Commensals to Leading Causes of Drug Resistant Infection [Internet]. Boston: Massachusetts Eye and Ear Infirmary; 2014-.