"Deinococcus" - Books

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Results: 20 books (56 items)

Select item 14152801.

Madame Curie Bioscience Database [Internet].

Austin (TX): Landes Bioscience; 2000-2013.

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Select item 15020682.

Annual Reviews Collection [Internet].

Bethesda (MD): National Center for Biotechnology Information (US); 2002 Nov.

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Select item 18690083.

Sequence - Evolution - Function: Computational Approaches in Comparative Genomics.

Koonin EV, Galperin MY.

Boston: Kluwer Academic; 2003.

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Select item 19111644.

Genomes. 2nd edition.

Brown TA.

Oxford: Wiley-Liss; 2002.

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Select item 50829285.

The Microbial World: Foundation of the Biosphere: This report is based on an American Academy of Microbiology colloquium held January 19-21, 1996, in Palm Coast, Florida. The colloquium was supported by the National Science Foundation, the National Oceanic and Atmospheric Administration of the U.S. Department of Commerce, the U.S. Department of Energy, and the American Society for Microbiology.

Washington (DC): American Society for Microbiology; 1997.

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Select item 52749986.

Report Series: Committee on Planetary Protection: Evaluation of Bioburden Requirements for Mars Missions.

National Academies of Sciences, Engineering, and Medicine; Division on Earth and Life Studies; Division on Engineering and Physical Sciences; Board on Life Sciences; Space Studies Board; Committee on Planetary Protection.

Washington (DC): National Academies Press (US); 2021 Oct 7.

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Select item 14416187.

Helicobacter pylori: Physiology and Genetics.

Mobley HLT, Mendz GL, Hazell SL, editors.

Washington (DC): ASM Press; 2001.

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Select item 30778628.

Enterococci: From Commensals to Leading Causes of Drug Resistant Infection [Internet].

Gilmore MS, Clewell DB, Ike Y, et al., editors.

Boston: Massachusetts Eye and Ear Infirmary; 2014-.

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Select item 23306689.

Microbial Evolution and Co-Adaptation: A Tribute to the Life and Scientific Legacies of Joshua Lederberg: Workshop Summary.

Institute of Medicine (US) Forum on Microbial Threats.

Washington (DC): National Academies Press (US); 2009.

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Select item 195922810.

Catalyzing Inquiry at the Interface of Computing and Biology.

National Research Council (US) Committee on Frontiers at the Interface of Computing and Biology; Wooley JC, Lin HS, editors.

Washington (DC): National Academies Press (US); 2005.

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Select item 299539811.

The Social Biology of Microbial Communities: Workshop Summary.

Institute of Medicine (US) Forum on Microbial Threats.

Washington (DC): National Academies Press (US); 2012.

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Select item 226000612.

Environmental Contamination, Biotechnology, and the Law: The Impact of Emerging Genomic Information.

National Research Council (US) Board on Life Sciences.

Washington (DC): National Academies Press (US); 2001.

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Select item 518831213.

Trace Metals and Infectious Diseases [Internet].

Nriagu JO, Skaar EP, editors.

Cambridge (MA): MIT Press; 2015.

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Select item 520369414.

Gliomas [Internet].

Debinski W, editor.

Brisbane (AU): Exon Publications; 2021 Apr 30.

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Select item 548820215.

RNA Damage and Repair.

Kotta-Loizou I, editor.

Cham (CH): Springer; 2021 Jul.

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Select item 568310616.

World Cancer Report: Cancer research for cancer prevention.

Wild CP, Weiderpass E, Stewart BW, editors.

Lyon (FR): International Agency for Research on Cancer; 2020.

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Select item 137097017.

Approved Lists of Bacterial Names (Amended).

Skerman VBD, McGowan V, Sneath PHA, editors.

Washington (DC): ASM Press; 1989.

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Select item 189578818.

Molecular Biology of the Cell. 4th edition.

Alberts B, Johnson A, Lewis J, et al.

New York: Garland Science; 2002.

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Select item 195089219.

Entrez Programming Utilities Help [Internet].

Bethesda (MD): National Center for Biotechnology Information (US); 2010-.

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Select item 539423820.

Leveraging Advances in Modern Science to Revitalize Low-Dose Radiation Research in the United States.

National Academies of Sciences, Engineering, and Medicine; Division on Earth and Life Studies; Nuclear and Radiation Studies Board; Committee on Developing a Long-Term Strategy for Low-Dose Radiation Research in the United States.

Washington (DC): National Academies Press (US); 2022 Oct 20.

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Figure 5.27Optical mapping

The image shows a 2.4-Mb segment of the Deinococcus radiodurans genome after treatment with the restriction endonuclease NheI. The positions of the cut sites are visible as gaps in the white strand of DNA. Reprinted with permission from Lin et al., Science, 285, 1558–1562. Copyright 1999 American Association for the Advancement of Science.

Mapping Genomes.

Brown TA. Genomes. 2nd edition. Oxford: Wiley-Liss; 2002.
Figure 1Example of a COG: monoamine oxidase

The COG for monoamine oxidase currently contains eight proteins from seven different organisms: one each from Deinococcus radiodurans (DRA0274), Mycobacterium tuberculosis (Rv3170), Bacillus subtilis (BS_yobN), Synechocystis (slr0782), Pseudomonas aeruginosa (PA0421), and Mesorhizobium loti (mll3668), and two paralogs from Caulobacter crescentus (CC2793 and CC1091). This is the only COG in the COGs database that has this phylogenetic pattern. In humans, monoamine oxidase is an enzyme of the mitochondrial outer membrane that seems to be involved in the metabolism of antibiotics and neurologically active agents and is a target for one class of antidepressant drugs.

The Clusters of Orthologous Groups (COGs) Database: Phylogenetic Classification of Proteins from Complete Genomes.

McEntyre J, Ostell J, editors. The NCBI Handbook [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2002-.
Figure 1

Phylogenetic tree of NRAMP genes. Nramp homologous genes: EIN2, AtNRAMP1 (AF 165125), AtNRAMP2 (AF 141204), AtNRAMP3 (AF202539), AtNRAMP4 (AF202540), AtNRAMP5 (At4g18790) and AtNRAMP6 (At1g15960) from Arabidopsis; OsNRAMP1 (L41217), OsNRAMP2 (L81152), OsNRAMP3 (U60767), OsNRAMP4 (2677.m00154), OsNRAMP5 (2125.m00086), OsNRAMP6 (2025.m00169) and OsNRAMP7 (2485.m 00126) from rice (Oryza sativa); LeNRAMP1 and LeNRAMP3 from tomato (lycopersicon esculentum) (Bereczki and Bauer personal communication). Note that for EIN2, only the sequence of the NRAMP homologous domain of the protein was taken into account to construct the tree. SMF1 (U15929) SMF2 (U00062) and SMF3 (S0004024) from yeast (Saccharomyces cerevisiae). MmNRAMP1 (L13732) and MmNRAMP2 (L33415) from mouse (Mus musculus). DCT1 is the rat homologue of MmNRAMP2. DmMVL1 stands for Mavolio 1 (U23948) from Drosophila melanogaster. DrMntH (AE002012), EcMntH (AF161318), PaMntH1 (AF161319), PaMntH2 (AF161320) and StMntH (AF161317) from bacteria (Deinococcus radiodurans, Escherichia coli, Pseudomonas aeruginosa and Salmonella typhimurium). The phylogenetic tree of NRAMP sequences was drawn using Treeview software after comparison of the deduced protein sequences with ClustalX software. One thousand bootstrap replicates were performed and the numbers on the nodes indicate the percentage of trees obtained with the node in the represented position on the tree.

Plant Metal Transporters with Homology to Proteins of the NRAMP Family.

Madame Curie Bioscience Database [Internet]. Austin (TX): Landes Bioscience; 2000-2013.
Figure 2.7Pyrimidine biosynthesis genes in organisms with completely sequenced genomes

Each rectangle signifies an enzyme of the pyrimidine biosynthesis pathway, indicated by its gene name and COG number. Alternative enzymes catalyzing the same reaction are shown side-by-side. Each COG is accompanied by the list of organisms represented in it (the phyletic pattern, see 2.2.6). The species abbreviations and order are as follows: a, Archaeoglobus fulgidus; o, Halobacterium sp.; m, methanogens (M. jannaschii and M. thermoauto-trophicum); p, thermoplasmas (T. acidophilum and T. volcanii); k, pyrococci (P. horikoshii and P. abyssi); z, Aeropyrum pernix; y, yeast (Saccharomyces cerevisiae); q, Aquifex aeolicus; v, Thermotoga maritima; d, Deinococcus radiodurans; r, mycobacteria (M. tuberculosis and M. leprae); l, streptococci (Lactococcus lactis and Streptococcus pyogenes); b, bacilli (B. subtilis and B. halodurans); c, Synechocystis sp.; e, Escherichia coli; f, Pseudomonas aeruginosa; g, Vibrio cholerae; h, Haemophilus influenzae; s, Xylella fastidiosa; n, Neisseria meningitidis; u, Helicobacter pylori and Campylobacter jejuni; j, Mesorhizobium loti and Caulobacter crescentus; x, Rickettsia prowazekii; i, chlamydiae (C. trachomatis and C. pneumoniae); t, spirochetes (Borrelia burgdorferi and Treponema pallidum); and w, mycoplasmas (M. genitalium, M. pneumoniae, and Ureaplasma urealyticum).

Evolutionary Concept in Genetics and Genomics.

Koonin EV, Galperin MY. Sequence - Evolution - Function: Computational Approaches in Comparative Genomics. Boston: Kluwer Academic; 2003.