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KMT2B-Related Disorders

, MD, PhD and , MA, MBBChir, PhD.

Author Information and Affiliations

Initial Posting: ; Last Update: May 22, 2025.

Estimated reading time: 46 minutes

Summary

Clinical characteristics.

KMT2B-related disorders include KMT2B-related dystonia (DYT-KMT2B), reported in 93% families, and KMT2B-related neurodevelopmental disorder (NDD) that is non-dystonic, reported in 7% of families.

DYT-KMT2B is a complex childhood-onset progressive movement disorder (median age of onset: 6 years; range: 0-43 years) typically evolving from lower-limb focal dystonia into generalized dystonia with prominent cervical, cranial, and laryngeal involvement. Communication difficulties secondary to articulation difficulties (dysarthria) and low speech volume (hypophonia) are common. Bulbar dysfunction can lead to impaired swallowing with an increased risk of aspiration and need for gastrostomy tube placement in some. Most individuals have additional neurologic or systemic manifestations including intellectual disability (ID) / developmental delay (DD), other movement disorders (myoclonus, spasticity, tremor, ataxia, eye movement abnormalities), and neurobehavioral/psychiatric manifestations (e.g., attention-deficit/hyperactivity disorder, anxiety, depression, and obsessive-compulsive disorder.) Life expectancy is not known; however, individuals in the seventh decade of life have been reported.

KMT2B-related NDD, sometimes described in family members of individuals with DYT-KMT2B, is characterized by DD and ID ranging from mild to severe. Additional findings can include bulbar dysfunction and neurobehavioral/psychiatric manifestations. Life expectancy is not known; to date, too few individuals have been reported.

Diagnosis/testing.

The diagnosis of a KMT2B-related disorder is established in a proband with suggestive findings and either of the following identified by molecular genetic testing: a heterozygous pathogenic variant involving KMT2B (~88% of affected individuals) or a heterozygous deletion of 19q13.11-19q13.12 involving KMT2B (~12% of affected individuals).

Management.

Treatment of manifestations: A movement disorder specialist should be involved early on to discuss pharmacologic and surgical treatment options. Although use of anti-dystonic agents (levodopa and other agents) has not resulted in long-term benefit for most individuals, a trial of these agents would be considered reasonable. Antimuscarinic (anticholinergic) agents have significantly improved motor manifestations in about 50% of individuals and should be considered a first-line pharmacologic treatment in individuals with a KMT2B-related disorder. Bilateral globus pallidus pars interna deep brain stimulation, performed in about 80 individuals to date, has resulted in substantial clinical and functional improvement. Treatment of DD/ID, neurobehavioral/psychiatric manifestations, communication difficulties, feeding difficulties, and other movement disorders should follow standard practice.

Surveillance: Assess for progression of known features and to identify new manifestations such as changes in tone and movement disorders with regularly scheduled follow up; at each visit, assess safety of oral intake, communication needs, mobility, self-help skills, features neurobehavioral/psychiatric manifestations, and family need for social work support (e.g., palliative/respite care, home nursing, other local resources), care coordination, or follow-up genetic counseling if new questions arise (e.g., family planning); assess developmental progress and educational needs throughout childhood and adolescence; full psychoeducational evaluation for children who have difficulty with school or behavioral changes.

Genetic counseling.

DYT-KMT2B and KMT2B-related NDD are autosomal dominant disorders. The majority of individuals reported to date with a KMT2B-related disorder whose parents have undergone molecular genetic testing have the disorder as a result of a de novo genetic alteration. Some individuals diagnosed with a KMT2B-related disorder inherited a genetic alteration from a parent (a parent with a KMT2B pathogenic variant may be affected or clinically asymptomatic). Each child of an individual with a KMT2B-related disorder has a 50% chance of inheriting the genetic alteration. Once the KMT2B pathogenic variant or deletion of 19q13.12 involving KMT2B has been identified in an affected family member, prenatal and preimplantation genetic testing are possible.

GeneReview Scope

KMT2B-Related Disorders: Included Phenotypes 1
  • KMT2B-related dystonia (DYT-KMT2B)
  • KMT2B-related neurodevelopmental disorder (KMT2B-related NDD)

For synonyms and outdated names, see Nomenclature.

1.

For other genetic causes of these phenotypes, see Differential Diagnosis.

Diagnosis

No consensus clinical diagnostic criteria for KMT2B-related disorders have been published.

Suggestive Findings

KMT2B-Related Dystonia (DYT-KMT2B)

DYT-KMT2B should be suspected in individuals with the following clinical and imaging findings and family history.

Clinical findings

  • Dystonia
    • Typical presentation. Early onset, progressive, and often complex (median age: 6 years; range: 0-43 years) [Lange et al 2021], most commonly with lower-limb manifestations such as foot posturing and new-onset toe walking or gait difficulties that evolve into generalized dystonia with prominent cranial, cervical, oromandibular, and laryngeal involvement
    • Atypical presentation. Upper-limb dystonia or cervical, oromandibular/laryngeal, and/or trunk dystonia without limb involvement
  • Developmental delay (DD) /intellectual disability (ID)
    • Developmental delay, in particular speech delay, preceding onset of dystonia
    • Intellectual disability ranging from mild to severe
  • Neurobehavioral/psychiatric manifestations including but not limited to autism spectrum disorder (ASD), attention-deficit/hyperactivity disorder (ADHD), anxiety, obsessive-compulsive disorder, and depression.

Brain imaging. Brain MRI is reported as normal in ~40% of individuals. Brain abnormalities found in ~27% of individuals ranging in age from three to 44 years include subtle and symmetrical hypointense lateral streaks in the external globus pallidus (see Figure 1) on T2-weighted, T2*-weighted, and susceptibility-weighted images [Meyer et al 2017, Dafsari et al 2019, Cif et al 2020, Ng et al 2020, Pandey et al 2020, Rajan et al 2021, Monfrini et al 2022, Dhar et al 2023].

Figure 1.

Figure 1.

Radiologic MRI features of individuals with KMT2B pathogenic variants a-l. T2*-weighted (a, d) and T2-weighted (b, c) images; echo-planar technique diffusion imaging data set images with b value of zero (e-h); susceptibility-weighted sequences (i-l)

Note: This pattern may be an age-dependent phenomenon, as these features may become less prominent over time and are often not evident in adults. Indeed, in five individuals such MRI changes were less evident on subsequent MRIs [Meyer et al 2017, Dafsari et al 2019, Cif et al 2020].

Cerebellar atrophy was described in three individuals [Damásio et al 2021, Dhar et al 2023, Ding et al 2024].

DaTscan was normal in four individuals, while two others showed decreased striatal uptake [Meyer et al 2017, Feuerstein et al 2021, Buzo et al 2022, Shimazaki et al 2022].

KMT2B-Related Neurodevelopmental Disorder (KMT2B-Related NDD)

KMT2B-related NDD should be suspected in individuals with the following clinical and imaging findings and family history.

Clinical findings

  • Mild-to-severe DD/ID
  • Neurobehavioral/psychiatric manifestations including ASD, ADHD, and behavioral abnormalities
  • Other
    • Intrauterine growth restriction (IUGR)
    • Short stature
    • Endocrinopathies including hypothyroidism and precocious puberty

Neuroimaging. In individuals with KMT2B-related NDD for whom data are available, imaging was normal or showed nonspecific brain abnormalities in one individual each (e.g., enlarged ventricles, posterior slit of sagittal suture and evidence of Dandy-Walker variation, posterior T2 periventricular hyperintensity and hypoplastic pituitary gland, and thin corpus callosum) [Forzano et al 2012, Abe et al 2018, Zhao et al 2018, Cif et al 2020, Ding et al 2024].

Family history. The affected individual may represent a simplex case (i.e., the only family member known to be affected) or, less commonly, the family history may suggest autosomal dominant inheritance (e.g., affected males and females in multiple generations). Absence of a known family history does not preclude the diagnosis.

Establishing the Diagnosis

The diagnosis of a KMT2B-related disorder is established in a proband with suggestive findings and one of the following identified by molecular genetic testing (see Table 1).

Note: (1) Per American College of Medical Genetics and Genomics / Association for Molecular Pathology variant interpretation guidelines, the terms "pathogenic variant" and "likely pathogenic variant" are synonymous in a clinical setting, meaning that both are considered diagnostic and can be used for clinical decision making [Richards et al 2015]. Reference to "pathogenic variants" in this GeneReview is understood to include likely pathogenic variants. (2) Identification of a heterozygous KMT2B variant of uncertain significance does not establish or rule out the diagnosis (see Molecular Pathogenesis).

Molecular genetic testing approaches can include a combination of gene-targeted testing (multigene panel), comprehensive genomic testing (chromosomal microarray analysis [CMA], genomic sequencing, exome array). Gene-targeted testing requires that the clinician determine which gene(s) are likely involved (see Option 1), whereas comprehensive genomic testing does not (see Option 2).

Note: Single-gene testing (sequence analysis of KMT2B, followed by gene-targeted deletion/duplication analysis) is rarely useful and typically NOT recommended.

Option 1

A multigene panel that includes KMT2B and other genes of interest (see Differential Diagnosis) is most likely to identify the genetic cause of the condition while limiting identification of pathogenic variants and variants of uncertain significance in genes that do not explain the underlying phenotype. Note: (1) The genes included in the panel and the diagnostic sensitivity of the testing used for each gene vary by laboratory and are likely to change over time. (2) Some multigene panels may include genes not associated with the condition discussed in this GeneReview. (3) In some laboratories, panel options may include a custom laboratory-designed panel and/or custom phenotype-focused exome analysis that includes genes specified by the clinician. (4) Methods used in a panel may include sequence analysis, deletion/duplication analysis, and/or other non-sequencing-based tests.

For an introduction to multigene panels click here. More detailed information for clinicians ordering genetic tests can be found here.

Option 2

Comprehensive genomic testing does not require the clinician to determine which gene is likely involved.

Chromosomal microarray analysis (CMA) uses oligonucleotide or SNP arrays to detect genome-wide large deletions/duplications (including KMT2B) that cannot be detected by sequence analysis.

Exome sequencing is most commonly used; genome sequencing is also possible. To date, the majority of KMT2B pathogenic variants reported (e.g., missense, nonsense) are within the coding region and are likely to be identified on exome sequencing. Pathogenic variants in exon 1 may be missed on exome sequencing [MA Kurian, personal observation], and a synonymous splicing variant has also been reported.

For an introduction to comprehensive genomic testing click here. More detailed information for clinicians ordering genomic testing can be found here.

Table 1.

Molecular Genetic Testing Used in KMT2B-Related Disorders

Gene 1MethodProportion of Pathogenic Variants 2 Identified by Method
KMT2B Sequence analysis (ES, GS, Sanger sequencing394% 4
CMA 56% 6
1.
2.

See Molecular Genetics for information on variants detected in this gene.

3.

Sequence analysis detects variants that are benign, likely benign, of uncertain significance, likely pathogenic, or pathogenic. Variants may include missense, nonsense, and splice site variants and small intragenic deletions/insertions; typically, exon or whole-gene deletions/duplications are not detected. For issues to consider in interpretation of sequence analysis results, click here.

4.
5.

Chromosomal microarray analysis (CMA) uses oligonucleotide or SNP arrays to detect genome-wide large deletions/duplications (including KMT2B) that cannot be detected by sequence analysis. The ability to determine the size of the deletion/duplication depends on the type of microarray used and the density of probes in the 19q13.11-19q13.12 region. CMA designs in current clinical use target the 19q13.12 region.

6.

Epigenetic signature analysis / methylation analysis is additional testing to consider in individuals with suggestive findings of a KMT2B-related disorder in whom other genetic testing has not identified a KMT2B pathogenic variant or contiguous gene deletion. Epigenetic signature analysis of a peripheral blood sample or DNA banked from a blood sample can be used to identify the disorder-specific genome-wide changes in DNA methylation profiles [Levy et al 2021, Lee et al 2022, Mirza-Schreiber et al 2022]. See Molecular Pathogenesis.

For an introduction to epigenetic signature analysis click here.

Clinical Characteristics

Clinical Description

KMT2B-related disorders include KMT2B-related dystonia (DYT-KMT2B) (258 individuals from 229 families) and KMT2B-related neurodevelopmental disorder (NDD) (27 individuals from 25 families).

DYT-KMT2B is a complex childhood-onset movement disorder typically characterized by a progressive disease course commonly evolving from lower-limb focal dystonia into generalized dystonia with prominent cervical, cranial, and laryngeal involvement. Communication difficulties secondary to articulation difficulties (dysarthria) and low speech volume (hypophonia) are common. Bulbar dysfunction leads to impaired swallowing with an increased risk of aspiration and gastrostomy tube placement in some. In most individuals, the movement disorder is accompanied by additional neurologic or systemic manifestations, as in complex dystonia. Intellectual disability (ID) / developmental delay (DD) is common. Neurobehavioral/psychiatric manifestations can include attention-deficit/hyperactivity disorder (ADHD), anxiety, depression, and obsessive-compulsive disorder.

Although many affected individuals follow a similar disease course, an increasing number have milder and atypical findings. Atypical first disease presentations include isolated upper limb, neck, trunk, or oromandibular/laryngeal dystonia or dystonic tremor [Zech et al 2016, Lange et al 2017, Meyer et al 2017, Zech et al 2017a, Zech et al 2017b, Hackenberg et al 2018, Kawarai et al 2018, Brás et al 2019, Carecchio et al 2019, Cif et al 2020, Grosz et al 2022, Horisawa et al 2020, Li et al 2020, Miyata et al 2020, Mun et al 2020, Winslow et al 2020, Buzo et al 2022, Monfrini et al 2022, Owczarzak et al 2022, Shimazaki et al 2022, Wu et al 2022, Chudy et al 2023, Dy Closas et al 2023, Heiser et al 2023, Lin et al 2023, Ding et al 2024, Makharia et al 2024].

KMT2B-related NDD has been described both in individuals who have family members with an inherited KMT2B pathogenic variant and a dystonic phenotype [Dai et al 2019, Kumar et al 2019, Monfrini et al 2022], as well as in individuals with no family history of a KMT2B-related disorder [Reuter et al 2017, Faundes et al 2018, Cif et al 2020, Monfrini et al 2022, Ding et al 2024]. Ten individuals with deletions involving chromosome 19q13.11-19q13.12 encompassing KMT2B presented with mild-to-severe DD/ID [Kulharya et al 1998, Malan et al 2009, Schuurs-Hoeijmakers et al 2009, Forzano et al 2012, Chowdhury et al 2014, Abe et al 2018]. Additional neurologic or systemic manifestations included poor weight gain / short stature, microcephaly, and skin features.

To date, about 238 individuals with a pathogenic variant in KMT2B and 33 individuals with deletions on chromosome 19q13.11-19q13.12 encompassing KMT2B have been reported. The following description of the phenotypic features associated with KMT2B-related disorders is based on these reports (see Table 2).

Table 2.

KMT2B-Related Disorders: Frequency of Select Features

Feature% of Persons w/Feature
DYT-KMT2B (n=271)KMT2B-related NDD (n=26)
Movement disordersDystonia100%None
Additional movement disorders 1~27%None
Laryngeal dysfunction~51%None
Bulbar or laryngeal dysfunction / feeding difficulties~30% 2~44%
Developmental delay~26%~81%
Intellectual disability~42%~89%
Neurobehavioral/psychiatric manifestations~26% 3~21% 4
Eye movement abnormalities~8%~11%
Seizures~2%~11% (febrile seizures)

DYT-KMT2B = KMT2B-related dystonia; NDD = neurodevelopmental disorder

1.

Including myoclonus, spasticity, tremor, and ataxia

2.

Bulbar dysfunction is difficult to assess in publications. This percentage assumes that laryngeal dysfunction is part of bulbar dysfunction, which is only included here if explicitly mentioned in the publication. (The actual percentage is probably higher.)

3.

Autism spectrum disorder (ASD) (4%), attention-deficit/hyperactivity disorder (ADHD) (10%), anxiety / obsessive-compulsive disorder (11%), depression / behavioral abnormalities not further specified (1.5%)

4.

ASD (7%), ADHD (7%), behavioral abnormalities not further specified (7%)

DYT-KMT2B

Age at onset. Disease onset typically occurs in the first decade, with a median age of onset of six years (range: 0-43 years) [Lange et al 2021]; however, onset in the second decade was reported in at least 13 individuals, and onset in the third to sixth decade was reported in at least 17 individuals for whom data were available.

Dystonia. Presenting manifestations of typical dystonia include the following:

  • Lower-limb dystonia characterized by foot posturing, toe walking, and gait disturbance (in ~66% individuals)
  • Upper-limb dystonia leading to abnormal hand/arm posturing, dystonic tremor, and difficulties in handwriting and hand dexterity (~15%)
  • Laryngeal dystonia / oromandibular dystonia (~10%)
  • Cervical dystonia (~5.5%)
  • Truncal/axial dystonia (~2%)
  • Dystonic tremor (~2%)

Over time, most individuals developed progressive cranial and cervical dystonia (retrocollis, torticollis).

Generalized dystonia becomes evident in most individuals (~68%) within two to 11 years of initial presentation [Meyer et al 2017, Lange et al 2022]. Marogianni et al [2021] correlated the age of onset with the type and progression of dystonia in 81 individuals, showing that the earlier the age of onset, the greater the likelihood of developing generalized dystonia.

The spectrum of gross motor disability is broad, ranging from minor gait disturbance to wheelchair dependence (Gross Motor Function Classification System II-V (GMFCS II-V) [Palisano et al 1997].

Presenting manifestations of atypical dystonia include the following:

Additional movement disorders, present in ~27% of individuals, include most frequently spasticity (~10%), myoclonus (~7%), and tremor (~7%) and less frequently chorea (~2%) and ataxia (~1.5%).

Laryngeal dysfunction. Communication difficulties secondary to laryngeal dystonia can cause articulation difficulties (dysarthria), inability to speak (anarthria), and/or low speech volume (spasmodic dysphonia).

Bulbar dysfunction can cause impaired swallowing and chewing that can result in substantial morbidity due to increased risk of aspiration. Some individuals require gastrostomy tube placement for feeding difficulties.

Developmental delay, reported in ~26% of affected individuals, usually precedes the onset of dystonia and is thought to be non-progressive. Isolated speech delay is reported in about 5% of individuals.

Intellectual disability is reported in ~42% of affected individuals, most of whom developed variable functional independence in adolescence and adulthood.

Neurobehavioral/psychiatric manifestations, reported in ~26% of individuals, include anxiety / obsessive-compulsive disorder (11%), attention-deficit/hyperactivity disorder (ADHD) (10%), autism spectrum disorder (ASD) (4%), and depression / behavioral abnormalities not further specified (1.5%).

Eye movement abnormalities, reported in ~7% of individuals, include strabismus, astigmatism, delay in saccade initiation, hypometric vertical saccades, and oculomotor apraxia.

Additional clinical features. The following were observed in a substantial proportion of individuals:

  • Microcephaly (~44%)
  • Other systemic features possibly related to the endocrine system (~38%) including short stature, precocious puberty, and hypothyroidism
  • Ophthalmologic findings, including refractive errors, end-gaze nystagmus, strabismus, slow saccades (~8%)
  • Dermatologic features (~4%) of ectodermal dysplasia including cutis aplasia, sparse hair, sparse to absent eyelashes or brows, hypertrichosis, and ichthyotic skin with criss-cross pattern under the feet and at the knees. Although broad postsurgical scarring and "phimosis" have been reported, it is not currently known if these features are incidental or truly disease related.
  • Seizures have been reported in four individuals: absence seizures (2), focal epilepsy (1), and unspecified epilepsy (1).

Intrafamilial variability. Intrafamilial variability has been observed in several families [Dai et al 2019, Kumar et al 2019, Monfrini et al 2022] including variable dystonic phenotypes and non-dystonic neurodevelopmental phenotypes [Lange et al 2021].

Prognosis. Life expectancy is not known; however, individuals in the seventh decade of life have been reported [Zech et al 2016].

KMT2B-Related NDD

A KMT2B-related (non-dystonic) neurodevelopmental phenotype has been reported in 26 individuals.

These individuals share similar clinical findings: pre- and postnatal growth restriction, feeding difficulties, microcephaly, developmental delay / intellectual disability (speech delay), ectodermal dysplasia, and genital malformations in males.

Developmental delay. Approximately 81% of affected individuals presented with early developmental delay, particularly speech delay.

Intellectual disability, present in ~89% of individuals, ranges from mild to severe.

Bulbar dysfunction, present in approximately 44% of individuals, manifests as feeding difficulties, necessitating tube feeding or gastrostomy tube placement.

Neurobehavioral/psychiatric manifestations, reported in 21% of individuals, include ADHD (7%), ASD (7%), and other behavioral abnormalities (7%).

Eye movement abnormalities, including nystagmus and strabismus, were observed in three individuals (11%).

Febrile seizures were reported in ~11% of individuals.

Signs of ectodermal dysplasia were present in almost all individuals with 19.q13.11-19.q13.12 deletions.

Prognosis. Little information is available, as most information on this phenotype is based on individual case reports for which no long-term follow-up information is available.

Genotype-Phenotype Correlations

Meyer et al [2017] reported statistically significant earlier disease onset in individuals with DYT-KMT2B with loss-of-function variants (e.g., interstitial deletions; frameshift, splice site, and stop-gain variants) compared to those with missense variants. However, the class of pathogenic variant does not appear to influence the rate of disease progression, disease severity, or clinical response to deep brain stimulation.

Cif et al [2020] reported (133 individuals) earlier onset of dystonia and more severe dystonia severity scores in individuals with chromosome 19q13 microdeletions and KMT2B protein-truncating variants than in individuals with missense variants.

Marogianni et al [2021] reported (81 individuals) a statistically significant earlier disease onset in those with a KMT2B insertion (mean age 4.4 years) compared to a KMT2B missense variant (mean age 8.7 years).

Penetrance

DYT-KMT2B is postulated to show reduced penetrance, as asymptomatic heterozygotes have been identified. Although parental status is not always known, to date two of 32 reported KMT2B pathogenic variants have been inherited from a seemingly unaffected parent [Meyer et al 2017].

Nomenclature

KMT2B-related dystonia may be referred to as DYT28 (OMIM 617284), DYT-KMT2B [Lange et al 2022], or KMT2B-deficient dystonia [Oexle et al 2023].

DYT-KMT2B may be categorized as either "isolated dystonia" or "complex dystonia."

Prevalence

Disease prevalence is not yet established. To date, 246 individuals from 229 families with DYT-KMT2B and 27 individuals from 25 families with KMT2B-related NDD have been described (see Clinical Description).

Differential Diagnosis

KMT2B-Related Dystonia

The differential diagnosis of KMT2B-related dystonia (DYT-KMT2B) includes early-onset isolated and complex generalized dystonia.

Complex dystonias (i.e., disorders with dystonia and other neurologic or systemic manifestations) include genetic neurodegenerative and metabolic disorders (see Table 3) and those that are acquired due to brain lesions (e.g., dyskinetic cerebral palsy), drugs (e.g., neuroleptics), or psychogenic causes. (Diagnosis and management of dystonia are reviewed in Albanese et al [2019].)

Table 3.

Genetic Disorders with Early-Onset Generalized Dystonia to Consider in the Differential Diagnosis of KMT2B-Related Dystonia

GeneDisorderMOISelected Features
ADCY5 ADCY5 dyskinesia ADProminent dystonia phenotype, chorea, orolingual dyskinesia, myoclonus, spasticity, episodic exacerbations of movement disorder, hypotonia
ATP13A2
C19orf12
COASY
FA2H
PANK2
PLA2G6
WDR45
Neurodegeneration w/brain iron accumulation disorders overview AR
XL
(AD) 1
  • Parkinsonism, spasticity, eye movement abnormalities, optic atrophy, axonal neuropathy, seizures
  • Characteristic T2-weighted hypointensity in globus pallidus & substantia nigra on MRI
ATP1A3 Rapid-onset dystonia-parkinsonism (See ATP1A3-Related Disorder.)AD
  • Prominent dystonia phenotype, parkinsonism, DD, neuropsychiatric features, seizures
  • ↓ tracer uptake on DaTscan
ATP7B Wilson disease AR
  • Psychiatric comorbidities
  • Tremor, liver disease, Kayser-Fleischer corneal ring
  • Face-of-the-giant-panda sign on MRI
  • Low serum ceruloplasmin concentration, high serum non-ceruloplasmin-bound copper concentration
DDC Aromatic L-amino acid decarboxylase deficiency AR
  • Progressive parkinsonism-dystonia, eye movement disorder, delayed motor milestones, hypotonia
  • ↓ tracer uptake on DaTscan
  • CSF neurotransmitter abnormalities
ATP13A2
FBX07
PLA2G6
SYNJ1
Juvenile-onset Parkinson disease (See Monogenic Parkinson Disease Overview.)AR
  • Prominent dystonia phenotype, parkinsonism, DD, neuropsychiatric features, seizures
  • ↓ tracer uptake on DaTscan
FUCA1 Alpha-fucosidosis ARID, dementia, delayed motor skills, dysostosis multiplex, seizures, spasticity, angiokeratomas, distinct facial features
GCDH Glutaric acidemia type 1 AR
  • Encephalopathic crisis assoc w/infections/fever (age 6-18 mos); macrocephaly
  • Frontotemporal atrophy, widening of sylvian fissures, T2-weighted hyperintensities in basal ganglia on MRI
  • ↑ urinary 3-hydroxyglutaric acid & glutarylcarnitine
GCH1 GTPCH1 deficiency (OMIM 233910)AR
  • Progressive parkinsonism-dystonia, eye movement disorder, delayed motor milestones, hypotonia
  • ↓ tracer uptake on DaTscan
  • CSF neurotransmitter abnormalities
GLB1 GM1 gangliosidosis type III (See GLB1-Related Disorders.)ARExtrapyramidal signs, skeletal abnormalities, cardiomyopathy
HPRT1 Lesch-Nyhan disease (See HPRT1 Disorders.)XL
  • Pyramidal signs, self-mutilation
  • Hyperuricemia
MCEE
MMAA
MMAB
MMADHC
MUT
Methylmalonic acidemia (See Isolated Methylmalonic Acidemia.)AR
  • Growth failure, renal syndromes, ID, metabolic stroke-like events, hypotonia, psychiatric features
  • ↑ plasma & urine methylmalonic acid w/normal B12, total homocysteine, & methionine levels; ↑ propionylcarnitine (C3); hyperammonemia; lactic acidosis
NPC1
NPC2
Niemann-Pick disease type C AR
  • Spasticity, hepatomegaly/splenomegaly, supranuclear gaze palsy, cataplexy, seizures, psychiatric comorbidities
  • ↑ oxysterol levels
PC Pyruvate carboxylase deficiency ARProminent dystonia phenotype
PCCA
PCCB
Late-onset propionic acidemiaAR
  • Poor growth, DD, ID, gastrointestinal symptoms, hypotonia, psychiatric features
  • ↑ propionylcarnitine (C3) in plasma, ↑ 3-hydroxypropionate in urine, hyperammonemia, lactic acidosis
POLG Early- or juvenile-onset POLG-related disordersAR
  • Multisystemic involvement
  • Commonly shows "Leigh" radiologic appearance of T2-weighted hyperintensities in basal ganglia / brain stem / medulla on MRI
  • Leukodystrophy
  • ↑ lactate concentration
  • Metabolic acidosis
PRKRA DYT-PRKRA (OMIM 612067)AR
  • Prominent dystonia phenotype, parkinsonism, DD, neuropsychiatric features, seizures
  • ↓ tracer uptake on DaTscan
SLC18A2 Infantile parkinsonism-dystonia 2 (OMIM 618049)AR
  • Progressive parkinsonism-dystonia, eye movement disorder, delayed motor milestones, hypotonia
  • ↓ tracer uptake on DaTscan
  • CSF neurotransmitter abnormalities
SLC30A10 Hypermanganesemia w/dystonia 1 AR
  • Parkinsonism, liver disease
  • T1-weighted hyperintensities in basal ganglia on MRI
  • Hypermanganesemia, polycythemia
SLC39A14 SLC39A14 deficiency AR
  • Parkinsonism, spasticity, dysarthria, bulbar dysfunction
  • T1-weighted hyperintensities & T2-weighted hypointensities in basal ganglia & anterior pituitary gland, cerebellum, dorsal pons, spinal cord on MRI
  • Hypermanganesemia
SLC6A3 SLC6A3-related dopamine transporter deficiency syndrome AR 2
  • Progressive parkinsonism-dystonia, eye movement disorder, delayed motor milestones, hypotonia
  • ↓ tracer uptake on DaTscan
  • CSF neurotransmitter abnormalities
SPR Sepiapterin reductase deficiency AR
  • Progressive parkinsonism-dystonia, eye movement disorder, delayed motor milestones, hypotonia
  • ↓ tracer uptake on DaTscan
  • CSF neurotransmitter abnormalities
TH Tyrosine hydroxylase deficiency AR
  • Progressive parkinsonism-dystonia, eye movement disorder, delayed motor milestones, hypotonia
  • ↓ tracer uptake on DaTscan
  • CSF neurotransmitter abnormalities
THAP1 DYT-THAP1AD
  • Early craniofacial involvement & laryngeal dystonia
  • Isolated dystonia w/older average age of onset
TIMM8A Deafness-dystonia-optic neuronopathy syndrome XLProminent dystonia phenotype
TOR1A DYT1 early-onset isolated dystonia ADIsolated dystonia w/less prominent cervical/cranial/bulbar features early in disease course
TUBB4A Hypomyelination w/atrophy of basal ganglia & cerebellum (See TUBB4A-Related Leukodystrophy.)AD
  • Prominent dystonia phenotype, ID, motor delay, spasticity
  • Hypomyelinating leukodystrophy, cerebellar & basal ganglia atrophy on MRI
>350 genes 3 Primary mitochondrial disorders AD
AR
MT
XL
  • Multisystemic involvement
  • Commonly shows "Leigh" radiologic appearance of T2-weighted hyperintensities in basal ganglia / brain stem / medulla on MRI
  • Leukodystrophy
  • ↑ lactate & pyruvate concentrations
  • Metabolic acidosis

AD = autosomal dominant; AR = autosomal recessive; CSF = cerebrospinal fluid; DD = developmental delay; ID = intellectual disability; MT = mitochondrial; MOI = mode of inheritance; XL = X-linked

1.

Neurodegeneration with brain iron accumulation (NBIA) disorders caused by pathogenic variants in ATP13A2, COASY, FA2H, PANK2, or PLA2G6 are inherited in an autosomal recessive manner. C19orf12-related NBIA is typically inherited in an autosomal recessive manner; autosomal dominant inheritance has been reported in some families. WDR45-related NBIA is inherited in an X-linked manner.

2.

In most individuals reported to date, SLC6A3-related dopamine transporter deficiency syndrome (DTDS) is caused by biallelic loss-of-function pathogenic variants and inherited in an autosomal recessive manner. Autosomal dominant SLC6A3-related DTDS caused by a heterozygous dominant-negative SLC6A3 pathogenic variant has been reported in one individual to date.

3.

KMT2B-Related Neurodevelopmental Disorder

The phenotypic features associated with KMT2B-related neurodevelopmental disorder (NDD) are not sufficient to diagnose this condition clinically; all disorders with intellectual disability without other distinctive findings should be considered in the differential diagnosis.

See OMIM Phenotypic Series for genes associated with:

The disorders in Table 4 include disorders in which the specific combination of selected features might make the diagnosis of KMT2B-related NDD more likely.

Table 4.

Selected Disorders in the Differential Diagnosis of KMT2B-Related Neurodevelopmental Disorder

Gene / Genetic MechanismDisorderMOISelected Features
11p15.5 hypomethylation, upd(7)mat, & other causes 1 Silver-Russell syndrome See footnote 1.IUGR, short stature, relative macrocephaly, dysmorphic features, delayed motor development
ATR
CPAP
CEP152
CEP63
DNA2
NIN
NSMCE2
RBBP8
TRAIP
Seckel syndrome (OMIM PS210600)ARIUGR, short stature, microcephaly, fifth finger clinodactyly, ID, seizures, hyperactivity
EHMT1 PV or 9q34.3 deletion involving EHMT1 Kleefstra syndrome ADMicrocephaly, DD, ID, hypotonia, gait disturbance, speech delay, behavioral difficulties, seizures
KMT2A (MLL) Wiedemann-Steiner syndrome ADDD, hypotonia, gait disturbance, speech delay, short stature, eye movement abnormalities, seizures, behavioral difficulties
KMT2D
KDM6A
Kabuki syndrome AD
XL
Microcephaly, DD, ID, hypotonia, gait disturbance, hearing loss, seizures
SETD1A SETD1A-related disorders (OMIM 611052)ADDD, ID, speech delay, hypotonia, seizures, behavioral abnormalities

AD = autosomal dominant; AR = autosomal recessive; DD = developmental delay; ID = intellectual disability; IUGR = intrauterine growth restriction; MOI = mode of inheritance; PV = pathogenic variant; upd(7)mat = maternal uniparental disomy of chromosome 7; XL = X-linked

1.

Silver-Russell syndrome (SRS) is a genetically heterogeneous condition. Genetic testing confirms clinical diagnosis in ~60% of affected individuals. Accurate assessment of SRS recurrence requires identification of the causative genetic mechanism in the proband.

Management

No clinical practice guidelines for KMT2B-related disorders have been published. In the absence of published guidelines, the following recommendations are based on the authors' personal experience managing individuals with this disorder.

Evaluations Following Initial Diagnosis

To establish the extent of disease and needs in an individual diagnosed with a KMT2B-related disorder, the evaluations summarized in Table 5 (if not performed as part of the evaluation that led to the diagnosis) are recommended.

Table 5.

KMT2B-Related Disorders: Recommended Evaluations Following Initial Diagnosis

System/ConcernEvaluationComment
Movement disorders Complete detailed neurologic examTo assess for:
  • Dystonia, myoclonus, spasticity
  • Possible effectiveness of deep brain stimulation
Activities of daily living Eval by physiatrist (physical medicine & rehab), PT, &/or OTConsider need for durable medical equipment (e.g., adaptive strollers, wheelchairs, walkers, bath chairs, orthotics).
Musculoskeletal Assess for secondary complications incl fixed contractures, joint dislocation, &/or kyphoscoliosis.By orthopedist
Speech & language Eval by speech-language therapistConsider need for alternative means of communication for those w/expressive language difficulties.
Dysphagia / Feeding difficulty Consider videofluoroscopy to access aspiration risk.
Nutritional assessment Eval by nutritionistTo assure adequate caloric intake
Development (young children) Eval by developmental pediatricianAssess need for early intervention program or IEP.
Cognitive function Eval by developmental pediatrician, child neurologist, neuropsychologistDevelopmental assessment / IQ testing
Ophthalmologic involvement Eval by ophthalmologistAssess vision & evaluate for abnormal eye movements incl oculomotor apraxia.
Neurobehavioral/psychiatric manifestations
  • Young children: developmental assessment by developmental pediatrician / pediatric psychologist
  • Older children / adults: neuropsychiatric testing by psychiatrist
Dermatologic Dermatologic exam
Genetic counseling By genetics professionals 1To obtain a pedigree & inform affected persons & their families re nature, MOI, & implications of KMT2B-related disorders to facilitate medical & personal decision making
Family support
& resources
By clinicians, wider care team, & family support organizationsAssessment of family & social structure to determine need for:

IEP = individualized education plan; MOI = mode of inheritance; OT = occupational therapist; PT = physical therapist; SNHL = sensorineural hearing loss

1.

Clinical geneticist, certified genetic counselor, certified genetic nurse, genetics advanced practice provider (nurse practitioner or physician assistant)

Treatment of Manifestations

There is no cure for KMT2B-related disorders. Supportive care to improve quality of life, maximize function, and reduce complications is recommended. This ideally involves multidisciplinary care by specialists in relevant fields. A movement disorder specialist should be involved at an early stage to discuss pharmacologic and surgical treatment options.

Pharmacologic treatment of dystonia

  • Anti-dystonic agents. Use of levodopa and other agents (e.g., trihexiphenidyl, baclofen, gabapentin, tetrabenazine, benzodiazepines) has not resulted in long-term benefit for most individuals with KMT2B-related disorders [Zech et al 2016, Meyer et al 2017, Zech et al 2017a, Lange et al 2021, Aksoy et al 2022]; nonetheless, a trial of these anti-dystonia agents would be considered reasonable.
  • Antimuscarinic (anticholinergic) agents have significantly improved motor manifestations (~50%) in individuals with KMT2B-related disorders [Lange et al 2021, Aksoy et al 2022] and should be considered first-line pharmacologic treatment in individuals with a confirmed diagnosis of a KMT2B-related disorder. Anticholinergics should be started at a low dose according to published guidelines for pediatric [Gorodetsky & Fasano 2022] and adult dystonia [Termsarasab et al 2016], and then titrated up slowly to the lowest effective dose without side effects.

Bilateral globus pallidus pars interna deep brain stimulation (GPi-DBS) has been performed in ~80 individuals and subthalamic nucleus DBS in two individuals. Substantial clinical and functional improvement was reported [Zech et al 2016, Meyer et al 2017, Zech et al 2017a, Zech et al 2017b, Carecchio et al 2019, Mun et al 2020, Li et al 2020, Winslow et al 2020, Cif et al 2020, Rajan et al 2021, Abel et al 2021, Buzo et al 2022, Pérez-Dueñas et al 2022, Ding et al 2024]:

  • A mean reduction of ~49.2% (range: 2%-98%) in the Burke-Fahn-Marsden Dystonia Rating Scale, Movement subscale (BFMDRS-M) was reported at follow-up times of two to 16 months after DBS in 45 individuals for whom data were available.
  • A mean reduction of ~38.3% (range: 9%-91%) in the Burke-Fahn-Marsden Dystonia Rating Scale, Disability subscale (BFMDRS-D) was reported at follow-up times of two to 12 months after DBS in 45 individuals for whom data were available.
  • Sustained clinical effect was observed in five-year long-term follow up, which demonstrated sustained improvement for trunk, neck, upper limb, and oromandibular dystonia [Cif et al 2020, Ding et al 2024].
  • However, despite initial improvement, DBS was less effective for lower-limb dystonia, with worsening of gait and loss of ambulation in all individuals [Cif et al 2020].
  • DBS has not been effective in the treatment of laryngeal dystonia [Carecchio et al 2019, Cif et al 2020]. An effect on speech was only reported in a minority of individuals [Kawarai et al 2018, Cao et al 2019, Li et al 2020, Abel et al 2021].
  • Freezing of gait is increasingly recognized as a complication of GPi-DBS in individuals with truncating KMT2B variants [Cif et al 2020, Feuerstein et al 2021].

Physical therapy. Early initiation of physical therapy and a tailored exercise program helps maintain function and prevent secondary orthopedic complications such as joint contractures, hip dislocation, and/or kyphoscoliosis.

Adaptive aids (e.g., ankle-foot orthoses, walkers) can support and maintain ambulation.

Fine motor dysfunction. Occupational therapy is recommended to address fine motor skills that affect adaptive function such as feeding, grooming, dressing, and writing.

Speech-language therapy helps assist in feeding skills and communication.

Alternative means of communication (e.g., augmentative and alternative communication [AAC]) may benefit individuals who have expressive language difficulties.

Neurobehavioral/psychiatric manifestations. Consultation with a developmental pediatrician may help guide parents through appropriate behavior management strategies and/or provide, when necessary, prescription medications (e.g., medication used to treat attention-deficit/hyperactivity disorder).

Children may qualify for and benefit from interventions such as applied behavior analysis (ABA). ABA therapy is targeted to the individual child's behavioral, social, and adaptive strengths and weaknesses; it is typically performed one on one with a board-certified behavior analyst.

Nutrition specialists / dieticians help assess calorie needs and reduce the risk of malnutrition.

Oral motor dysfunction. Assuming that the individual is safe to eat by mouth, feeding therapy, typically from an occupational or speech therapist, is recommended for affected individuals who have difficulty feeding due to poor oral motor control.

Videofluoroscopy can be used to evaluate the risk of aspiration and the need for alternative means of feeding.

Respiratory. For individuals with respiratory compromise from chest deformities related to scoliosis, prophylactic antibiotics during the winter months, regular chest physical therapy, and influenza immunizations should be considered because of the increased risk of pulmonary infections.

Developmental Delay / Intellectual Disability Management Issues

The following information represents typical management recommendations for individuals with developmental delay / intellectual disability in the United States; standard recommendations may vary from country to country.

Ages 0-3 years. Referral to an early intervention program is recommended for access to occupational, physical, speech, and feeding therapy as well as infant mental health services, special educators, and sensory impairment specialists. In the US, early intervention is a federally funded program available in all states that provides in-home services to target individual therapy needs.

Ages 3-5 years. In the US, developmental preschool through the local public school district is recommended. Before placement, an evaluation is made to determine needed services and therapies and an individualized education plan (IEP) is developed for those who qualify based on established motor, language, social, or cognitive delay. The early intervention program typically assists with this transition. Developmental preschool is center based; for children too medically unstable to attend, home-based services are provided.

All ages. Consultation with a developmental pediatrician is recommended to ensure the involvement of appropriate community, state, and educational agencies (US) and to support parents in maximizing quality of life. Some issues to consider:

  • IEP services:
    • An IEP provides specially designed instruction and related services to children who qualify.
    • IEP services will be reviewed annually to determine whether any changes are needed.
    • Special education law requires that children participating in an IEP be in the least restrictive environment feasible at school and included in general education as much as possible, when and where appropriate.
    • Vision consultants should be a part of the child's IEP team to support access to academic material.
    • Physical therapy (PT), occupational therapy (OT), and speech services will be provided in the IEP to the extent that the need affects the child's access to academic material. Beyond that, private supportive therapies based on the affected individual's needs may be considered. Specific recommendations regarding type of therapy can be made by a developmental pediatrician.
    • As an individual enters the teen years, a transition plan should be discussed and incorporated in the IEP. For those receiving IEP services, the public school district is required to provide services until age 21 years.
  • A 504 plan (Section 504: a US federal statute that prohibits discrimination based on disability) can be considered for those who require accommodations or modifications such as front-of-class seating, assistive technology devices, classroom scribes, extra time between classes, modified assignments, and enlarged text.
  • Developmental Disabilities Administration (DDA) enrollment is recommended. DDA is a US public agency that provides services and support to qualified individuals. Eligibility differs by state but is typically determined by diagnosis and/or associated cognitive/adaptive disabilities.
  • Families with limited income and resources may also qualify for supplemental security income (SSI) for their child with a disability.

Surveillance

To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations summarized in Table 6 are recommended.

Table 6.

KMT2B-Related Disorders: Recommended Surveillance

System/ConcernEvaluationFrequency
Neurologic Assess for progression of known features & new manifestations such as changes in tone & movement disorders.2-4x/yr depending on severity of symptoms
Development Monitor developmental progress & educational needs.At each visit
Growth, weight, & nutrition
  • For children: measure weight & height using age-appropriate & sex-matched growth charts.
  • Evaluate nutritional status.
Feeding Assess safety of oral intake.
Musculoskeletal Monitor known secondary complications & evaluate for new ones (e.g., fixed contractures, joint dislocation, &/or kyphoscoliosis).
Activities of daily living Physical medicine, OT/PT assessment of mobility, self-help skills
Speech & language / Communication Eval by SLP re existing treatments & need for additional intervention (incl AAC)
Neurobehavioral/Psychiatric Assessment for anxiety, ADHD, ASD, aggression, & self-injuryAt each visit; initiate further testing if needed
Ophthalmologic involvement Assess visual acuity, refractive error, & strabismus.Annually or more frequently if concerns
Respiratory Monitor for evidence of aspiration & respiratory insufficiency.At each visit
Family/Community Assess family need for social work support (e.g., palliative/respite care, home nursing, other local resources), care coordination, or follow-up genetic counseling if new questions arise (e.g., family planning).

AAC = augmentative and alternative communication; ADHD = attention-deficit/hyperactivity disorder; ASD = autism spectrum disorder; OT = occupational therapy; PT = physical therapy; SLP = speech-language pathologist

Evaluation of Relatives at Risk

See Genetic Counseling for issues related to testing of at-risk relatives for genetic counseling purposes.

Pregnancy Management

Anti-dystonic medications. Prior to conception, counseling a woman with DYT-KMT2B regarding potential effects of anti-dystonic medications on the pregnancy and developing fetus is recommended to develop a plan for managing these medications during pregnancy.

Data on the use of anti-dystonic agents in pregnancy are limited. Although single case reports of medical treatment with trixhexyphenidyl, levodopa/carbidopa, and clonazepam during pregnancy have not reported adverse effects on the affected mother or the fetus [Watanabe et al 2009, Mendhekar & Andrade 2011, Nageshwaran et al 2011, Robottom & Reich 2011, Serikawa et al 2011, Watanabe & Matsubara 2012, Dostal et al 2013], oral medications may preferably be tapered to the lowest effective dose.

Antiemetics. It is recommended that pregnant women and their care providers be advised about the possible induction of dystonic side effects of antiemetics (i.e., dopamine receptor antagonists [metoclopramide, domperidone] or 5-HT3 serotonin receptor antagonist [ondansetron]) [Nageshwaran et al 2011].

Deep brain stimulation (DBS). In women treated with DBS prior to conception, no adverse effects on the affected mother or the fetus have been reported [Scelzo et al 2015, Ziman et al 2016, Park et al 2017].

See MotherToBaby for further information on medication use during pregnancy.

Therapies Under Investigation

Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.

Genetic Counseling

Genetic counseling is the process of providing individuals and families with information on the nature, mode(s) of inheritance, and implications of genetic disorders to help them make informed medical and personal decisions. The following section deals with genetic risk assessment and the use of family history and genetic testing to clarify genetic status for family members; it is not meant to address all personal, cultural, or ethical issues that may arise or to substitute for consultation with a genetics professional. —ED.

Mode of Inheritance

KMT2B-related dystonia (DYT-KMT2B) and KMT2B-related neurodevelopmental disorder (NDD) are autosomal dominant disorders often caused by a de novo genetic alteration (i.e., a KMT2B pathogenic variant or deletion of 19q13.12 involving KMT2B).

Risk to Family Members

Parents of a proband

Sibs of a proband. The risk to the sibs of the proband depends on the genetic status of the proband's parents.

  • If a parent of the proband is affected and/or is known to have the genetic alteration identified in the proband, the risk to the sibs of inheriting the genetic alteration is 50%. Intrafamilial variability and reduced penetrance have been observed in KMT2B-related disorders.
  • If the genetic alteration identified in the proband cannot be detected in the leukocyte DNA of either parent, the recurrence risk to sibs is estimated to be 1% because of the possibility of parental gonadal mosaicism [Rahbari et al 2016].
  • If the proband represents a simplex case and the parents are clinically unaffected but have not been tested for the genetic alteration identified in the proband, sibs of the proband are still at increased risk for a KMT2B-related disorder because of the possibility of reduced penetrance in a heterozygous parent or parental gonadal mosaicism.

Offspring of a proband. Each child of an individual with a KMT2B-related disorder has a 50% chance of inheriting the genetic alteration.

Other family members. The risk to other family members depends on the status of the proband's parents: if a parent has the KMT2B pathogenic variant or deletion of 19q13.12 involving KMT2B, the parent's family members may be at risk.

Related Genetic Counseling Issues

Family planning

  • The optimal time for determination of genetic risk and discussion of the availability of prenatal/preimplantation genetic testing is before pregnancy.
  • It is appropriate to offer genetic counseling (including discussion of potential risks to offspring and reproductive options) to young adults who are affected or at risk.
  • Prior to conception, counseling a woman with DYT-KMT2B regarding potential effects of anti-dystonic medications on the pregnancy and developing fetus is recommended to develop a plan for managing these medications during pregnancy (see Pregnancy Management).

Prenatal Testing and Preimplantation Genetic Testing

Once a KMT2B pathogenic variant or deletion of 19q13.11-13.12 involving KMT2B has been identified in an affected family member, prenatal and preimplantation genetic testing are possible.

Differences in perspective may exist among medical professionals and within families regarding the use of prenatal and preimplantation genetic testing. While most health care professionals would consider use of prenatal and preimplantation genetic testing to be a personal decision, discussion of these issues may be helpful.

Resources

GeneReviews staff has selected the following disease-specific and/or umbrella support organizations and/or registries for the benefit of individuals with this disorder and their families. GeneReviews is not responsible for the information provided by other organizations. For information on selection criteria, click here.

Molecular Genetics

Information in the Molecular Genetics and OMIM tables may differ from that elsewhere in the GeneReview: tables may contain more recent information. —ED.

Table A.

KMT2B-Related Disorders: Genes and Databases

Data are compiled from the following standard references: gene from HGNC; chromosome locus from OMIM; protein from UniProt. For a description of databases (Locus Specific, HGMD, ClinVar) to which links are provided, click here.

Table B.

OMIM Entries for KMT2B-Related Disorders (View All in OMIM)

606834LYSINE-SPECIFIC METHYLTRANSFERASE 2B; KMT2B
617284DYSTONIA 28, CHILDHOOD-ONSET; DYT28
619934INTELLECTUAL DEVELOPMENTAL DISORDER, AUTOSOMAL DOMINANT 68; MRD68

Molecular Pathogenesis

KMT2B encodes histone-lysine N-methyltransferase 2B (KMT2B), a ubiquitously expressed lysine-specific histone methyltransferase. KMT2B, a member of the SET/MLL protein family, is specifically involved in histone H3 lysine 4 (H3K4) methylation. Histone methylation is a post-translational epigenetic mechanism that either represses or activates gene transcription in a residue-specific manner [Shi & Whetstine 2007, Shilatifard 2008]. Indeed, Ciolfi et al [2021] confirmed a non-random distribution of hypermethylation in the genome in pathogenic KMT2B variants. Hypermethylation was overrepresented in regulatory regions such as promoters or other regulators that positively control gene expression, indicating a general repression of transcriptional activity in KMT2B-related disorders. Besides gene activation, H3K4 is also thought to be essential for transcriptional stability and enhanced transcriptional consistency [Muramoto et al 2010, Benayoun et al 2014].

The exact pathogenic mechanisms in KMT2B-related disorders remain to be fully elucidated. Given that dysregulated H3K4 methylation affects the transcriptional activation and stability of a variety of genes, it is likely that additional genes or other genetic mechanisms contribute to KMT2B-related disorders.

Mechanism of disease causation. Loss-of-function KMT2B pathogenic variants are predicted to alter gene dosage, leading to KMT2B haploinsufficiency.

KMTB2-specific laboratory technical considerations. Note: Epigenetic signature analysis / methylation array can be useful in evaluating KMT2B variants of uncertain significance [Levy et al 2021, Lee et al 2022, Mirza-Schreiber et al 2022].

Chapter Notes

Author Notes

Dr Lucia Abela
Department of Child Neurology
University Children's Hospital Zurich
Zurich, Switzerland

Dr Abela is a pediatric neurologist with a special clinical and research interest in childhood movement disorders.

Professor Manju Kurian
Developmental Neurosciences
UCL-Great Ormond Street Institute of Child Health
London, United Kingdom

Professor Kurian is a pediatric neurologist and clinician-scientist with a clinical and research interest in childhood movement disorders.

Dr Kurian's web page

Contact Dr Kurian to inquire about review of KMT2B variants of uncertain significance.

Acknowledgments

Dr Kurian is funded by an NIHR Research Professorship and the Wellcome Trust. Dr Abela was funded by a Swiss National Foundation Advanced Postdoc Mobility fellowship.

Revision History

  • 22 May 2025 (bp) Comprehensive update posted live
  • 26 April 2018 (bp) Review posted live
  • 19 October 2017 (la/mak) Original submission

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