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Entrez® Programming Utilities Help [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2010-.
Table 1
– Valid values of &retmode and &rettype for EFetch (null = empty string)
|
Record Type |
&rettype |
&retmode |
|
All Databases | ||
|
Document summary |
docsum |
xml, default |
|
List of UIDs in XML |
uilist |
xml |
|
List of UIDs in plain text |
uilist |
text |
|
db = bioproject | ||
|
Full record XML |
xml, default |
xml, default |
|
db = biosample | ||
|
Full record XML |
full, default |
xml, default |
|
Full record text |
full, default |
text |
|
db = gds | ||
|
Summary |
summary, default |
text, default |
|
db = gene | ||
|
text ASN.1 |
null |
asn.1, default |
|
XML |
null |
xml |
|
Gene table |
gene_table |
text |
|
db = homologene | ||
|
text ASN.1 |
null |
asn.1, default |
|
XML |
null |
xml |
|
Alignment scores |
alignmentscores |
text |
|
FASTA |
fasta |
text |
|
HomoloGene |
homologene |
text |
|
db = mesh | ||
|
Full record |
full, default |
text, default |
|
db = nlmcatalog | ||
|
Full record |
null |
text, default |
|
XML |
null |
xml |
|
db = nuccore, protein or popset | ||
|
text ASN.1 |
null |
text, default |
|
binary ASN.1 |
null |
asn.1 |
|
Full record in XML |
native |
xml |
|
Accession number(s) |
acc |
text |
|
FASTA |
fasta |
text |
|
TinySeq XML |
fasta |
xml |
|
SeqID string |
seqid |
text |
|
Additional options for db = nuccore or popset | ||
|
GenBank flat file |
gb |
text |
|
GBSeq XML |
gb |
xml |
|
INSDSeq XML |
gbc |
xml |
|
Additional option for db = nuccore and protein | ||
|
Feature table |
ft |
text |
|
Additional option for db = nuccore | ||
|
GenBank flat file with full sequence (contigs) |
gbwithparts |
text |
|
CDS nucleotide FASTA |
fasta_cds_na |
text |
|
CDS protein FASTA |
fasta_cds_aa |
text |
|
Additional options for db = protein | ||
|
GenPept flat file |
gp |
text |
|
GBSeq XML |
gp |
xml |
|
INSDSeq XML |
gpc |
xml |
|
Identical Protein XML |
ipg |
xml |
|
db = pmc | ||
|
XML |
null |
xml, default |
|
MEDLINE |
medline |
text |
|
db = pubmed | ||
|
XML |
null |
xml, default |
|
MEDLINE |
medline |
text |
|
PMID list |
uilist |
text |
|
Abstract |
abstract |
text |
|
db = sequences | ||
|
text ASN.1 |
null |
text, default |
|
Accession number(s) |
acc |
text |
|
FASTA |
fasta |
text |
|
SeqID string |
seqid |
text |
|
db = snp | ||
|
text ASN.1 |
null |
asn.1, default |
|
XML |
null |
xml |
|
Flat file |
flt |
text |
|
FASTA |
fasta |
text |
|
RS Cluster report |
rsr |
text |
|
SS Exemplar list |
ssexemplar |
text |
|
Chromosome report |
chr |
text |
|
Summary |
docset |
text |
|
UID list |
uilist |
text or xml |
|
db = sra | ||
|
XML |
full, default |
xml, default |
|
db = taxonomy | ||
|
XML |
null |
xml, default |
|
TaxID list |
uilist |
text or xml |
|
db = clinvar | ||
|
ClinVar Set |
clinvarset |
xml, default |
|
UID list |
uilist |
text or xml |
|
db = gtr | ||
|
GTR Test Report |
gtracc |
xml, default |
- Table 1, [– Valid values of &retmode and &rettype for EFetch (null = empty strin...Table 1, [– Valid values of &retmode and &rettype for EFetch (null = empty string)]. - Entrez® Programming Utilities Help
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