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Entrez Programming Utilities Help [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2010-.
Table 1
– Valid values of &retmode and &rettype for EFetch (null = empty string)
| Record Type | &rettype | &retmode |
| All Databases | ||
| Document summary | docsum | xml, default |
| List of UIDs in XML | uilist | xml |
| List of UIDs in plain text | uilist | text |
| db = bioproject | ||
| Full record XML | xml, default | xml, default |
| db = biosample | ||
| Full record XML | full, default | xml, default |
| Full record text | full, default | text |
| db = biosystems | ||
| Full record XML | xml, default | xml, default |
| db = gds | ||
| Summary | summary, default | text, default |
| db = gene | ||
| text ASN.1 | null | asn.1, default |
| XML | null | xml |
| Gene table | gene_table | text |
| db = homologene | ||
| text ASN.1 | null | asn.1, default |
| XML | null | xml |
| Alignment scores | alignmentscores | text |
| FASTA | fasta | text |
| HomoloGene | homologene | text |
| db = mesh | ||
| Full record | full, default | text, default |
| db = nlmcatalog | ||
| Full record | null | text, default |
| XML | null | xml |
| db = nuccore, nucest, nucgss, protein or popset | ||
| text ASN.1 | null | text, default |
| binary ASN.1 | null | asn.1 |
| Full record in XML | native | xml |
| Accession number(s) | acc | text |
| FASTA | fasta | text |
| TinySeq XML | fasta | xml |
| SeqID string | seqid | text |
| Additional options for db = nuccore, nucest, nucgss or popset | ||
| GenBank flat file | gb | text |
| GBSeq XML | gb | xml |
| INSDSeq XML | gbc | xml |
| Additional option for db = nuccore and protein | ||
| Feature table | ft | text |
| Additional option for db = nuccore | ||
| GenBank flat file with full sequence (contigs) | gbwithparts | text |
| CDS nucleotide FASTA | fasta_cds_na | text |
| CDS protein FASTA | fasta_cds_aa | text |
| Additional option for db = nucest | ||
| EST report | est | text |
| Additional option for db = nucgss | ||
| GSS report | gss | text |
| Additional options for db = protein | ||
| GenPept flat file | gp | text |
| GBSeq XML | gp | xml |
| INSDSeq XML | gpc | xml |
| Identical Protein XML | ipg | xml |
| db = pmc | ||
| XML | null | xml, default |
| MEDLINE | medline | text |
| db = pubmed | ||
| text ASN.1 | null | asn.1, default |
| XML | null | xml |
| MEDLINE | medline | text |
| PMID list | uilist | text |
| Abstract | abstract | text |
| db = sequences | ||
| text ASN.1 | null | text, default |
| Accession number(s) | acc | text |
| FASTA | fasta | text |
| SeqID string | seqid | text |
| db = snp | ||
| text ASN.1 | null | asn.1, default |
| XML | null | xml |
| Flat file | flt | text |
| FASTA | fasta | text |
| RS Cluster report | rsr | text |
| SS Exemplar list | ssexemplar | text |
| Chromosome report | chr | text |
| Summary | docset | text |
| UID list | uilist | text or xml |
| db = sra | ||
| XML | full, default | xml, default |
| db = taxonomy | ||
| XML | null | xml, default |
| TaxID list | uilist | text or xml |
| db = clinvar | ||
| ClinVar Set | clinvarset | xml, default |
| UID list | uilist | text or xml |
| db = gtr | ||
| GTR Test Report | gtracc | xml, default |
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