Table 1.

A list of Web-based PubChem services for the BioAssay resource

ServiceDescriptionURL example
BioActivity Analysis ServicesHome page for bioactivity data analysis serviceshttp://pubchem​.ncbi.nlm.nih.gov/assay/
BioAssay SummaryBioAssay summary page for a given AIDhttp://pubchem​.ncbi.nlm​.nih.gov/assay/assay.cgi?aid=myAID
BioAssay Data Table (concise view)Concise data table for a given AID. The table includes SID,CID, structure, bioactivity outcome, score, and active concentration value if availablehttp://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?p=datatable
http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?q=r&aid=myAID
BioAssay Data Table (complete view)Complete data table for given AID, including all deposited test resultshttp://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?p=datatable
http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?q=r&resultsummary=detail&aid=myAID
BioAssay Test Results SelectionSelect/search BioAssay test resultshttp://pubchem​.ncbi.nlm​.nih.gov/assay/assay​.cgi?q=t&aid=myAID
BioAssay SearchSearch BioAssay Database with Entrezhttp://www​.ncbi.nlm.nih.gov/pcassay/
BioAssay Search, Limits pageAn interface for constructing an Entrez queryhttp://www.ncbi.nlm.nih.gov/pcassay/limits
BioAssay Search, Advanced PageAn interface for reviewing search history and combining search resultshttp://www.ncbi.nlm.nih.gov/pcassay/advanced
PubChem Upload SystemChemical structure and BioAssay submission toolhttp://pubchem.ncbi.nlm.nih.gov/upload/#welcome
BioActivity Summary - Assay-centricBioActivity Summary presented from the assay point of viewhttp://pubchem.ncbi.nlm.nih.gov/assay/bioactivity.cgi
BioActivity Summary - Compound-centricBioActivity Summary presented from the compound point of viewhttp://pubchem.ncbi.nlm.nih.gov/assay/bioactivity.cgi
BioActivity Summary - Target-centricBioActivity Summary presented from the target point of viewhttp://pubchem.ncbi.nlm.nih.gov/assay/bioactivity.cgi
BioActivity SummaryBioActivity information for a single SID,CID, GI, GeneIDhttp://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?sid=mySID
http://pubchem.ncbi.nlm.nih.gov/assay/assay/cgi?cid=myCID
http://pubchem.ncbi.nlm.nih.gov/assay/assay/cgi?cid=myGI
http://pubchem.ncbi.nlm.nih.gov/assay/assay/cgi?cid=myGeneID
Structure-Activity Analysis (SAR)Structure-Activity relationship analysis and visualization in a heatmap-style display.http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?p=heat
Related BioAssaysRelated BioAssays by: Activity Overlap, Target Similarity, Deposited Annotation, Same Publication, or Common BioSystems.http://pubchem.ncbi.nlm.nih.gov/assay/assayHeatmap.cgi?service=assayneighbor&aid=myAID
Scatter Plot/HistogramBioAssay test results plotting functionshttp://pubchem.ncbi.nlm.nih.gov/assay/plot.cgi?plottype=2
Dose-response curveDraw dose-response curves for confirmatory assays containing dose-response data pointshttp://pubchem​.ncbi.nlm​.nih.gov/assay/assayHeatmap​.cgi?service​=assaygraph&aid​=523&sid=16952359http://pubchem​.ncbi.nlm​.nih.gov/assay/plot.cgi?plottype=1
BioAssay downloadAssay data download servicehttp://pubchem​.ncbi.nlm​.nih.gov/assay/assaydownload.cgi
http://pubchem​.ncbi.nlm​.nih.gov/assay/assay.cgi?aid=myAID
ftp://ftp.ncbi.nlm.nih.gov/pubchem/BioAssay/

From: NCBI PubChem BioAssay Database

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