The Immunologic Mechanisms of Celiac Disease
Inflammatory mechanisms and immunologic responses in the digestive system provide protection from bacteria, toxins, and other foreign elements in the food and water supply. Immunoglobulin (Ig) A, made in abundance by the intestinal immune system, is important in local (mucosal) immunity. In celiac disease, an inappropriate immune response leads to chronic inflammation and damage of the small intestinal mucosa. The two main categories of immune response involved in celiac disease are the adaptive immune response (human leukocyte antigen [HLA] specific) and the innate immune response (independent of HLA type), and both are needed for the development of celiac disease with tissue damage [Voisine & Abadie 2021, Patt et al 2023]. Key drivers of celiac pathophysiology are the main environmental trigger (gluten peptides as antigen, deamidated by tissue transglutaminase [tTG]), the key genetic predisposing factor (HLA DQ2 and DQ8 molecules to which the peptides bind), ensuing anti-gluten inflammatory CD4+ T-cell response, B-cell response creating anti-gliadin and autoantibodies (tTG IgA), and killing of intestinal epithelial cells by cytotoxic CD8+ T cells [Voisine & Abadie 2021].
Genetic susceptibility to celiac disease. Genetic susceptibility to celiac disease is conferred by the presence of specific HLA-DQA1 and HLA-DQB1 alleles and haplotypes that encode the major histocompatibility complex (MHC) class II heterodimers DQ2 and DQ8, glycoproteins found on the surface of antigen-presenting cells (APCs), particularly dendritic cells, B cells, and plasma cells. This is estimated to account for approximately 50% of celiac disease heritability. Celiac-associated non-HLA genes identified to date account for ~14% of heritability, so not all genetic factors have been determined.
The great majority (>90%) of individuals with celiac disease have DQ2.5, and most of the remainder have DQ8 (see Table 1 and Table 2). A small percentage of individuals who do not have DQ2.5 or DQ8 have DQ2.2 (with the beta chain encoded by DQB1*02, the beta half of DQ2) or DQ7.5 (with the alpha chain encoded by DQA1*05, the alpha half of DQ2).
DQ2 and DQ8 confer susceptibility to celiac disease by presenting the deamidated gliadin subcomponent of gluten to specific CD4+ T helper cells of the immune system in the intestinal mucosa (see , , and ) [Sollid & Lundin 2014, Voisine & Abadie 2021, Abadie et al 2024].
Gluten-reactive CD4+ T helper cells (with cell-surface CD4 markers) become activated upon recognition by a T-cell receptor of gluten peptides presented by HLA-DQ2 or HLA-DQ8 protein molecules on the surface of antigen-presenting cells (APCs) in the lamina (more...)
The landscape of celiac disease pathogenesis including interplay between several immune pathways in distinct gut locations Digestion-resistant gluten peptides from dietary gluten in the lumen are transported across the epithelium into lamina propria, (more...)
Celiac disease is a multifactorial complex autoimmune disorder that requires the interplay between genetics, innate and adaptive immunity, and environmental triggers to cause tissue destruction. In individuals with HLA-DQ2, HLA-DQ8, and/or other celiac-associated (more...)
Immunopathogenic mechanisms. For an overview of celiac pathophysiology, see Voisine & Abadie [2021], Levescot et al [2022], and Doyle et al [2025]. See for depiction of the steps of celiac disease development and the interplay between several immune pathways.
Gliadin (a component of gluten) contains a proline-rich section that is resistant to digestion by proteolytic enzymes in the intestinal lumen and results in a 33-mer peptide that can be transported across the epithelial barrier from the intestinal lumen to the lamina propria by a well-characterized process [Verdu & Schuppan 2021]. Usually there is oral tolerance to dietary antigens, but in individuals genetically predisposed to celiac disease, oral tolerance is lost and leads to a gluten-specific pro-inflammatory T-cell response [Voisine & Abadie 2021].
Adaptive immune response (HLA dependent). Details of the adaptive immune response (HLA dependent) are described in the legends of and . The adaptive pro-inflammatory CD4+ T-cell response is a driver toward tissue damage / villous atrophy, but damage does not occur without concomitant activation of intraepithelial cytotoxic lymphocytes (IE-CTLs) through an innate immune pathway involving gluten directly.
Innate immune response to gluten and epithelial stress. In addition to the adaptive immune response, an innate response to gluten involving intraepithelial CD8+ cytotoxic T lymphocytes (IELs) is also key to the pathogenesis of celiac disease. The gluten-specific HLA-restricted T-cell response is central but not sufficient to cause mucosal damage [FitzPatrick et al 2025]. In individuals with celiac disease, gluten independently induces epithelial stress through overproduction of interleukin-15 cytokine (IL-15) from CD8+ IE-CTLs, which acquire cytotoxic NK (natural killer)-like properties. More details are provided in the legends of and . Individuals with potential celiac disease who have anti-tTG antibodies (and hence an adaptive immune response to gluten) lack villous atrophy and do not show accumulation of IE-CTLs with the NK phenotype or upregulation of IL-15 [Voisine & Abadie 2021]. A new twist from recent studies is that intestinal epithelial cells are not only a target of immune-mediated damage but can express celiac-associated MHC class II heterodimers and contribute to the anti-gluten T-cell response [Rahmani et al 2024].
Additional environmental factors. Numerous additional environmental factors (both external and internal) have been reported to be involved in the development of celiac disease. Although details are beyond the scope of this GeneReview, a few examples are amylase trypsin inhibitor (ATI) proteins in wheat that stimulate innate responses, certain microbes, changes in intestinal permeability of the epithelial barrier, and the microbiota [Verdu & Schuppan 2021, Matera & Guandalini 2024].
Regarding the microbiota, a literature review of 364 papers led to the conclusion that individuals with celiac disease have an altered composition of the gut microbiota compared to healthy individuals (though the changes could be the cause and/or the consequence of celiac disease); the microbiota influences the inflammatory response to gluten, the loss of gluten tolerance, and the pathogenesis progression, and the gluten-free diet fails to rectify the dysbiosis [Matera & Guandalini 2024]. Studies have shown that the microbiota composition of infants with genetic susceptibility to celiac disease is different from that of infants not at genetic risk for the disorder [Matera & Guandalini 2024]. More prospective longitudinal studies are needed to gain a better understanding of the role of the microbiota in celiac disease development [Matera & Guandalini 2024].