Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
AAI50538.1
LIN28B protein, partial [Homo sapiens]
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Query length:
227 aa
DOMAINS: and other(s) domains
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Protein lin-28 .1| Protein lin-28 [Caenorhabditis elegans]
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Protein lin-28 [Caenorhabditis elegans] >emb|CAB61009.1| Protein lin-28 [Caenorhabditis elegans]
196 aa protein
accession:NP_492281.2
lin-28 9VRN5.2| RecName: Full=Protein lin-28 homolog [Drosophila melanogaster] >gb|ACL86407.1| lin-28-PA, partial [synthetic construct] >gb|AAF50758.2| lin-28 [Drosophila melanogaster] >gb|AAM48389.1| RE05342p [Drosophila melanogaster] >gb|AAM77748.1| RNA-binding protein LIN-28 [Drosophila melanogaster] >gb|ACL91097.1| lin-28-PA [synthetic construct]
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lin-28 [Drosophila melanogaster] >sp|Q9VRN5.2| RecName: Full=Protein lin-28 homolog [Drosophila melanogaster] >gb|ACL86407.1| lin-28-PA, partial [synthetic construct] >gb|AAF50758.2| lin-28 [Drosophila melanogaster] >gb|AAM48389.1| RE05342p [Drosophila melanogaster] >gb|AAM77748.1| RNA-binding protein LIN-28 [Drosophila melanogaster] >gb|ACL91097.1| lin-28-PA [synthetic construct]
195 aa protein
accession:NP_647983.1
protein lin-28 homolog A-like isoform X1
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protein lin-28 homolog A-like isoform X1 [Danio rerio]
193 aa protein
accession:XP_017206944.1
protein lin-28 homolog B isoform X1 8 homolog B isoform X1 [Mus musculus]
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protein lin-28 homolog B isoform X1 [Mus musculus] >ref|XP_036011766.1| protein lin-28 homolog B isoform X1 [Mus musculus]
303 aa protein
accession:XP_011241482.1
Query: LIN28B protein, partial
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LIN28B protein, partial [Homo sapiens]
227 aa protein
accession:AAI50538.1
protein lin-28 homolog B isoform X1 8 homolog B isoform X1 [Homo sapiens]
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protein lin-28 homolog B isoform X1 [Homo sapiens] >ref|XP_054211391.1| protein lin-28 homolog B isoform X1 [Homo sapiens]
269 aa protein
accession:XP_006715540.2
DOMAINS: and other(s) domains
...
Protein lin-28 [Caenorhabditis elegans] >emb|CAB61009.1| Protein lin-28 [Caenorhabditis elegans]
196 aa protein
accession:NP_492281.2
lin-28 [Drosophila melanogaster] >sp|Q9VRN5.2| RecName: Full=Protein lin-28 homolog [Drosophila melanogaster] >gb|ACL86407.1| lin-28-PA, partial [synthetic construct] >gb|AAF50758.2| lin-28 [Drosophila melanogaster] >gb|AAM48389.1| RE05342p [Drosophila melanogaster] >gb|AAM77748.1| RNA-binding protein LIN-28 [Drosophila melanogaster] >gb|ACL91097.1| lin-28-PA [synthetic construct]
195 aa protein
accession:NP_647983.1
protein lin-28 homolog A-like isoform X1 [Danio rerio]
193 aa protein
accession:XP_017206944.1
protein lin-28 homolog B isoform X1 [Mus musculus] >ref|XP_036011766.1| protein lin-28 homolog B isoform X1 [Mus musculus]
303 aa protein
accession:XP_011241482.1
LIN28B protein, partial [Homo sapiens]
227 aa protein
accession:AAI50538.1
protein lin-28 homolog B isoform X1 [Homo sapiens] >ref|XP_054211391.1| protein lin-28 homolog B isoform X1 [Homo sapiens]
269 aa protein
accession:XP_006715540.2
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
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1 | 464 | 464 | 100% | 5e-167 | 100.00% | XP_006715540.2 | |
2 | 389 | 389 | 100% | 6e-137 | 78.49% | XP_011241482.1 | |
3 | 251 | 251 | 69% | 4e-84 | 74.05% | XP_017206944.1 | |
4 | 120 | 120 | 61% | 2e-32 | 48.23% | NP_647983.1 | |
5 | 82.4 | 82.4 | 61% | 5e-18 | 40.00% | NP_492281.2 |