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MIGS Cultured Bacterial/Archaeal sample from Lactobacillus vaginalis ATCC 49540

Identifiers
BioSample: SAMN00001485; Sample name: BCM-HMP0050; SRA: SRS001950
Organism
Lactobacillus vaginalis DSM 5837 = ATCC 49540
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus vaginalis
Package
MIGS: cultured bacteria/archaea; version 4.0
Attributes
strainATCC 49540
estimated size1806000
culture collectionATCC:49540
environment featureHomo sapiens-associated habitat [ENVO:00009003]
investigation typemissing
host taxonomy ID9606 (9606)
environment materialbiological product [ENVO:02000043]
number of repliconsnot determined
reference for biomaterialnot determined
geographic locationnot determined
environment biometerrestrial biome [ENVO:00000446]
latitude and longitudenot determined
environmental packagemissing
collection datenot determined
hostHomo sapiens
isolation and growth conditionnot determined
source material identifiersATCC 49540, NCTC 12197
project nameLactobacillus vaginalis ATCC 49540
isolation sourcemissing
misc_param: HMP supersiteurogenital_tract
project_typeReference Genome
nucleic acid extractionnot determined
finishing strategy (depth of coverage)Level 2: High-Quality Draft90.9x;202
sophttp://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
sequencing method454-GS-FLX, Illumina, Sanger
assemblyNewbler v. 2.0.0-Eclipse
misc_param: HMP body siteVaginal
Description

Lactobacillus vaginalis ATCC 49540

Keywords: GSC:MIxS;MIGS:4.0

Links
BCM HMP Project
BioProject
PRJNA31507 Lactobacillus vaginalis ATCC 49540
Retrieve all samples from this project

Submission
BCM; 2009-01-09
Accession:
SAMN00001485
ID:
1485

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