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Phoenix dactylifera cultivar Sukary EST-SSR library

Identifiers
BioSample: SAMN01924514; EST: LIBEST_028116
Organism
Phoenix dactylifera (date palm)
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Attributes
cultivarSukary
sexfemale
development stagedifferent growth stages
tissuefemale flower, developed fruits, leaves, needles
Description

Pooled total RNA of young leaves, needles and fruits at different growth stages of a single female date palm tree (variety Sukary) was used for ds cDNA synthesis and amplification. RNA was isolated using Invitrogen's Concert Plant RNA Reagent (Life Technologies, Grand Island, NY, USA), Following isolation RNA was sent to Evrogen (Moscow, Russia) for normalization and cDNA synthesis option (CS011-2B LEVEL 2B). cDNA species were cloned into pAL17.3 cloning vector (Evrogen, Moscow, Russia). Clones were sequenced using an ABI 3730xl DNA automatic capillary sequencer and the ABI Big Dye Terminator sequencing kit. Software codonecode aligner (CodonCode Corporation.Centerville, MA, USA) was used for base calling and vector removal. Low quality sequences were also omitted. Expressed sequenced tags (EST) obtained were screened for di, tri, tetra and penta simple sequence repeats (SSR) using batch primer3 software.

Submission
King Saud University, Al-Faifi, S.A.; 2013-02-22
Accession:
SAMN01924514
ID:
1924514

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