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Lung_A_14

Identifiers
BioSample: SAMN22425891; SRA: SRS10650547; GEO: GSM5640761
Organism
Homo sapiens (human)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo
Attributes
source nameRapid biopsy post-morterm lung tissue Donor CUN5/A
tissuepost-morterm lung
diseaseCOVID-19
morphologyGeometric; Alveolar morphology
sample nameCUN5_3_014
moleculeOligonucleotide
individualdonor CUN5/A
severitySevere
sample name_2DSP-1012340036901-C07
title_2CUN5_3_ROI_014_well_C07
slide idCUN5_3
roi number014
segment typeSegment1
area296527
nuclei_counts1163
roi x coordinate33287
roi y coordinate33001
rawreads4581375
alignedreads4276763
deduplicatedreads665721
trimmedreads4564506.0
stitchedreads4519393.0
sequencingsaturation85.5
severity binarySevere
proximal sars-cov-2 nucleocapsid proteinNo
Links
GEO Sample GSM5640761
BioProject
PRJNA772979 Spatial transcriptomic characterization of the lung parenchyma during COVID-19 pneumonitis
Retrieve all samples from this project

Submission
TRIG, NDS, University of Oxford, Amy Cross; 2021-10-20
Accession:
SAMN22425891
ID:
22425891

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