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Pathogen: clinical or host-associated sample from Clostridioides difficile

Identifiers: BioSample: SAMN07339707; Sample name: LC5624

Organism: Clostridioides difficile
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides

Package: Pathogen: clinical or host-associated; version 1.0

Attributes

strain	DH/NAP11/106/ST-42
collected by	Children's Memorial Hospital
collection date	2012-03-08
geographic location	USA: Chicago
host	Homo sapiens
host disease	Clostridium difficile-associated diarrhea
isolation source	stool from hospitalized pediatric patient
latitude and longitude	41.93 N 87.65 W
genotype	ST-42
host disease outcome	frequently relapsing C difficile infection
host subject id	LC5624
host tissue sampled	stool
serotype	DH/NAP11/106/ST-42

BioProject: PRJNA393704 Clostridioides difficile strain:DH/NAP11/106/ST-42 | isolate:hospitalized pediatric patient
Retrieve all samples from this project

Submission: Northwestern University, Larry Kociolek; 2017-07-10

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
metronidazole	susceptible	==	0.25	mg/L	MIC			agar dilution	CLSI
vancomycin	not defined	==	0.5	mg/L	MIC			agar dilution	CLSI
rifaximin	not defined	==	0.0039	mg/L	MIC			agar dilution	CLSI
fidaxomicin	not defined	==	0.125	mg/L	MIC			agar dilution	CLSI
surotomycin	not defined	==	0.25	mg/L	MIC			agar dilution	CLSI
clindamycin	intermediate	==	4	mg/L	MIC			agar dilution	CLSI
moxifloxacin	susceptible	==	2	mg/L	MIC			agar dilution	CLSI
ampicillin	susceptible	==	0.5	mg/L	MIC			broth microdilution	NCCLS
ciprofloxacin	not defined	==	32	mg/L	MIC			broth microdilution	NCCLS

Accession:: SAMN07339707
ID:: 7339707

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Pathogen: clinical or host-associated sample from Clostridioides difficile
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