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Xanthomonas citri pv. fuscans Genome sequencing and assembly

Identifiers
BioSample: SAMN06829862; Sample name: CFBP6166; SRA: SRS8472483
Organism
Xanthomonas citri pv. phaseoli var. fuscans
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xanthomonas; Xanthomonas citri group; Xanthomonas citri
Package
Microbe; version 1.0
Attributes
strainCFBP6166
hostPhaseolus vulgaris
collection date1963
geographic locationSouth Africa
sample typecell culture
biomaterial providerCFBP
culture collectionCFBP:6166
Description

Common bacterial blight of bean is due to strains from either Xanthomonas phaseoli pv. phaseoli (Xpp) or Xanthomonas citri pv. fuscans (Xcf). This seed-borne disease is worldwide distributed and is responsible for serious economic damages to the bean production. This justifies that this bacterial pathogen is classified in quarantine lists in countries that are still disease-free. We provided genomes sequenced by single molecule real time (SMRT) sequencing for 17 Xpp and Xcf strains. Causal agents of common bacterial blight are phylogenetically diverse and these genomes will help to gain more informations on the determinants of host adaptation. In particular, SMRT sequencing will allow the analysis of complex genes containing internal repeats such as Transcription Activator-Like (TAL) effectors.

BioProject
PRJNA384183 Xanthomonas citri pv. phaseoli var. fuscans strain:CFBP6166
Retrieve all samples from this project

Submission
IRHS, Nicolas Chen; 2017-04-25
Accession:
SAMN06829862
ID:
6829862

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